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  5. Spa_g51354

Spa_g51354


Description : not classified & original description: none


Gene families : OG0003744 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003744_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Spa_g51354
Cluster HCCA: Cluster_56

Target Alias Description ECC score Gene Family Method Actions
Als_g22968 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g05875 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g17550 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
LOC_Os11g09310.1 LOC_Os11g09310 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
MA_10436899g0020 No alias no hits & (original description: none) 0.01 OrthoFinder output from all 47 species
MA_10436899g0030 No alias no hits & (original description: none) 0.01 OrthoFinder output from all 47 species
Msp_g28891 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g12425 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pp3c14_17690V3.1 Pp3c14_17690 zinc knuckle (CCHC-type) family protein 0.02 OrthoFinder output from all 47 species
Solyc01g060030.3.1 Solyc01g060030 no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
Tin_g09740 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e035681_P001 Zm00001e035681 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP HCCA
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP HCCA
BP GO:0000398 mRNA splicing, via spliceosome IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
CC GO:0005956 protein kinase CK2 complex IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
MF GO:0019207 kinase regulator activity IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
MF GO:0019887 protein kinase regulator activity IEP HCCA
CC GO:0030532 small nuclear ribonucleoprotein complex IEP HCCA
MF GO:0031072 heat shock protein binding IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
MF GO:0042393 histone binding IEP HCCA
CC GO:0046540 U4/U6 x U5 tri-snRNP complex IEP HCCA
MF GO:0051082 unfolded protein binding IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
CC GO:0061695 transferase complex, transferring phosphorus-containing groups IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
CC GO:0097525 spliceosomal snRNP complex IEP HCCA
CC GO:0097526 spliceosomal tri-snRNP complex IEP HCCA
CC GO:0120114 Sm-like protein family complex IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
CC GO:1902554 serine/threonine protein kinase complex IEP HCCA
CC GO:1902911 protein kinase complex IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
CC GO:1990234 transferase complex IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA

No InterPro domains available for this sequence

No external refs found!