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  5. Spa_g46754

Spa_g46754 (PSRP4)


Aliases : PSRP4

Description : component *(bTHXc) of small plastid ribosomal-subunit proteome & original description: none


Gene families : OG0003575 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003575_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Spa_g46754
Cluster HCCA: Cluster_90

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00029p00235620 PSRP4,... Protein biosynthesis.organelle translation... 0.03 OrthoFinder output from all 47 species
AT2G21290 No alias unknown protein; FUNCTIONS IN: molecular_function... 0.01 OrthoFinder output from all 47 species
AT2G38140 PSRP4 plastid-specific ribosomal protein 4 0.13 OrthoFinder output from all 47 species
Aev_g09530 PSRP4 component *(bTHXc) of small plastid ribosomal-subunit... 0.05 OrthoFinder output from all 47 species
Ala_g00113 PSRP4 component *(bTHXc) of small plastid ribosomal-subunit... 0.09 OrthoFinder output from all 47 species
Als_g33915 PSRP4 component *(bTHXc) of small plastid ribosomal-subunit... 0.05 OrthoFinder output from all 47 species
Aob_g07535 PSRP4 component *(bTHXc) of small plastid ribosomal-subunit... 0.04 OrthoFinder output from all 47 species
Aop_g00094 PSRP4 component *(bTHXc) of small plastid ribosomal-subunit... 0.12 OrthoFinder output from all 47 species
Aspi01Gene12306.t1 PSRP4, Aspi01Gene12306 component *(bTHXc) of small plastid ribosomal-subunit... 0.03 OrthoFinder output from all 47 species
Azfi_s0035.g025463 PSRP4 component *(bTHXc) of small plastid ribosomal-subunit... 0.07 OrthoFinder output from all 47 species
Cba_g05525 PSRP4 component *(bTHXc) of small plastid ribosomal-subunit... 0.05 OrthoFinder output from all 47 species
Ceric.36G025700.1 PSRP4, Ceric.36G025700 component *(bTHXc) of small plastid ribosomal-subunit... 0.06 OrthoFinder output from all 47 species
Dac_g00361 PSRP4 component *(bTHXc) of small plastid ribosomal-subunit... 0.04 OrthoFinder output from all 47 species
Ehy_g30276 PSRP4 component *(bTHXc) of small plastid ribosomal-subunit... 0.06 OrthoFinder output from all 47 species
LOC_Os05g09400.1 PSRP4, LOC_Os05g09400 no hits & (original description: none) 0.11 OrthoFinder output from all 47 species
Len_g02488 PSRP4 component *(bTHXc) of small plastid ribosomal-subunit... 0.11 OrthoFinder output from all 47 species
Lfl_g05135 PSRP4 component *(bTHXc) of small plastid ribosomal-subunit... 0.08 OrthoFinder output from all 47 species
MA_202598g0010 PSRP4 component psPSRP4 of small ribosomal subunit proteome 0.1 OrthoFinder output from all 47 species
Mp1g04130.1 PSRP4 component psPSRP4 of small ribosomal subunit proteome 0.05 OrthoFinder output from all 47 species
Msp_g01793 PSRP4 component *(bTHXc) of small plastid ribosomal-subunit... 0.07 OrthoFinder output from all 47 species
Ore_g00050 PSRP4 component *(bTHXc) of small plastid ribosomal-subunit... 0.07 OrthoFinder output from all 47 species
Pir_g00298 PSRP4 component *(bTHXc) of small plastid ribosomal-subunit... 0.04 OrthoFinder output from all 47 species
Ppi_g04757 PSRP4 component *(bTHXc) of small plastid ribosomal-subunit... 0.09 OrthoFinder output from all 47 species
Sacu_v1.1_s0128.g021882 PSRP4 component *(bTHXc) of small plastid ribosomal-subunit... 0.07 OrthoFinder output from all 47 species
Sam_g25773 No alias component *(bTHXc) of small plastid ribosomal-subunit... 0.03 OrthoFinder output from all 47 species
Sam_g47706 No alias component *(bTHXc) of small plastid ribosomal-subunit... 0.05 OrthoFinder output from all 47 species
Solyc05g052710.3.1 PSRP4, Solyc05g052710 component psPSRP4 of small ribosomal subunit proteome 0.08 OrthoFinder output from all 47 species
Tin_g08590 PSRP4 component *(bTHXc) of small plastid ribosomal-subunit... 0.04 OrthoFinder output from all 47 species
Zm00001e018923_P004 PSRP4, Zm00001e018923 component psPSRP4 of small ribosomal subunit proteome 0.07 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0005840 ribosome IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000049 tRNA binding IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006284 base-excision repair IEP HCCA
BP GO:0006352 DNA-templated transcription initiation IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
CC GO:0009521 photosystem IEP HCCA
CC GO:0009523 photosystem II IEP HCCA
CC GO:0009654 photosystem II oxygen evolving complex IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0015979 photosynthesis IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
CC GO:0019898 extrinsic component of membrane IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043603 amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
CC GO:1990204 oxidoreductase complex IEP HCCA
InterPro domains Description Start Stop
IPR030826 Ribo_THX 99 152
No external refs found!