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  5. Spa_g26358

Spa_g26358


Description : not classified & original description: none


Gene families : OG0003481 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003481_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Spa_g26358

Target Alias Description ECC score Gene Family Method Actions
Adi_g010871 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020592.36 No alias No description available 0.03 OrthoFinder output from all 47 species
Dde_g02947 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
GSVIVT01012211001 No alias Pentatricopeptide repeat-containing protein At1g26460,... 0.02 OrthoFinder output from all 47 species
Gb_21554 No alias Pentatricopeptide repeat-containing protein At1g26460,... 0.04 OrthoFinder output from all 47 species
LOC_Os07g40800.1 LOC_Os07g40800 Pentatricopeptide repeat-containing protein At1g26460,... 0.03 OrthoFinder output from all 47 species
MA_10436610g0010 No alias Pentatricopeptide repeat-containing protein At1g26460,... 0.02 OrthoFinder output from all 47 species
Mp1g25580.1 No alias Pentatricopeptide repeat-containing protein At1g26460,... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0093.g019038 No alias not classified & original description: CDS=213-2159 0.02 OrthoFinder output from all 47 species
Zm00001e010701_P001 Zm00001e010701 Pentatricopeptide repeat-containing protein At1g26460,... 0.03 OrthoFinder output from all 47 species
Zm00001e035476_P002 Zm00001e035476 Pentatricopeptide repeat-containing protein At1g26460,... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0002097 tRNA wobble base modification IEP HCCA
BP GO:0002098 tRNA wobble uridine modification IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004175 endopeptidase activity IEP HCCA
MF GO:0004252 serine-type endopeptidase activity IEP HCCA
MF GO:0004809 tRNA (guanine-N2-)-methyltransferase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006400 tRNA modification IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0008033 tRNA processing IEP HCCA
MF GO:0008170 N-methyltransferase activity IEP HCCA
MF GO:0008173 RNA methyltransferase activity IEP HCCA
MF GO:0008175 tRNA methyltransferase activity IEP HCCA
MF GO:0008233 peptidase activity IEP HCCA
MF GO:0008236 serine-type peptidase activity IEP HCCA
MF GO:0008237 metallopeptidase activity IEP HCCA
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016423 tRNA (guanine) methyltransferase activity IEP HCCA
MF GO:0016462 pyrophosphatase activity IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP HCCA
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP HCCA
MF GO:0016887 ATP hydrolysis activity IEP HCCA
MF GO:0017111 ribonucleoside triphosphate phosphatase activity IEP HCCA
MF GO:0017171 serine hydrolase activity IEP HCCA
MF GO:0031072 heat shock protein binding IEP HCCA
CC GO:0033588 elongator holoenzyme complex IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
MF GO:0051082 unfolded protein binding IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 550 596
No external refs found!