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  5. Spa_g17544

Spa_g17544


Description : subunit beta2 of coat protein complex & original description: none


Gene families : OG0002111 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002111_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Spa_g17544

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00142p00013680 evm_27.TU.AmTr_v1... Vesicle trafficking.Coat protein I (COPI) coatomer... 0.05 OrthoFinder output from all 47 species
AT1G79990 No alias structural molecules 0.08 OrthoFinder output from all 47 species
AT3G15980 No alias Coatomer, beta' subunit 0.03 OrthoFinder output from all 47 species
Adi_g015312 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g07650 No alias subunit beta2 of coat protein complex & original... 0.03 OrthoFinder output from all 47 species
Aev_g13025 No alias subunit beta2 of coat protein complex & original... 0.03 OrthoFinder output from all 47 species
Ala_g02602 No alias subunit beta2 of coat protein complex & original... 0.05 OrthoFinder output from all 47 species
Als_g04780 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Als_g23306 No alias subunit beta2 of coat protein complex & original... 0.02 OrthoFinder output from all 47 species
Aob_g06720 No alias subunit beta2 of coat protein complex & original... 0.03 OrthoFinder output from all 47 species
Aop_g12571 No alias subunit beta2 of coat protein complex & original... 0.03 OrthoFinder output from all 47 species
Aspi01Gene63522.t1 Aspi01Gene63522 subunit beta2 of coat protein complex & original... 0.03 OrthoFinder output from all 47 species
Azfi_s0001.g000608 No alias subunit beta2 of coat protein complex & original... 0.04 OrthoFinder output from all 47 species
Cba_g14578 No alias subunit beta2 of coat protein complex & original... 0.06 OrthoFinder output from all 47 species
Ceric.30G060200.1 Ceric.30G060200 subunit beta2 of coat protein complex & original... 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020903.33 No alias Vesicle trafficking.Coat protein I (COPI) coatomer... 0.02 OrthoFinder output from all 47 species
Cre02.g118500 No alias Vesicle trafficking.Coat protein I (COPI) coatomer... 0.04 OrthoFinder output from all 47 species
Dac_g05778 No alias subunit beta2 of coat protein complex & original... 0.06 OrthoFinder output from all 47 species
Dcu_g04083 No alias subunit beta2 of coat protein complex & original... 0.06 OrthoFinder output from all 47 species
Dde_g02366 No alias subunit beta2 of coat protein complex & original... 0.05 OrthoFinder output from all 47 species
Ehy_g08641 No alias subunit beta2 of coat protein complex & original... 0.02 OrthoFinder output from all 47 species
GSVIVT01017121001 No alias Vesicle trafficking.Coat protein I (COPI) coatomer... 0.05 OrthoFinder output from all 47 species
Gb_26317 No alias subunit beta2 of coat protein complex 0.02 OrthoFinder output from all 47 species
LOC_Os02g11830.2 LOC_Os02g11830 subunit beta2 of coat protein complex 0.03 OrthoFinder output from all 47 species
LOC_Os02g11840.1 LOC_Os02g11840 subunit beta2 of coat protein complex 0.04 OrthoFinder output from all 47 species
LOC_Os06g05180.3 LOC_Os06g05180 Coatomer subunit beta-1 OS=Oryza sativa subsp. japonica... 0.07 OrthoFinder output from all 47 species
Len_g12266 No alias subunit beta2 of coat protein complex & original... 0.05 OrthoFinder output from all 47 species
Len_g46090 No alias subunit beta2 of coat protein complex & original... 0.06 OrthoFinder output from all 47 species
Len_g57302 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g05710 No alias subunit beta2 of coat protein complex & original... 0.06 OrthoFinder output from all 47 species
MA_10433989g0020 No alias Coatomer subunit beta-2 OS=Oryza sativa subsp. japonica... 0.02 OrthoFinder output from all 47 species
MA_10436677g0010 No alias Coatomer subunit beta-3 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
MA_10436836g0020 No alias Coatomer subunit beta-1 OS=Oryza sativa subsp. japonica... 0.04 OrthoFinder output from all 47 species
MA_10436968g0010 No alias peroxisomal polyamine oxidase (PAO2/3/4). subunit beta2... 0.03 OrthoFinder output from all 47 species
Mp3g04060.1 No alias subunit beta2 of coat protein complex 0.05 OrthoFinder output from all 47 species
Msp_g01672 No alias subunit beta2 of coat protein complex & original... 0.03 OrthoFinder output from all 47 species
Nbi_g07405 No alias subunit beta2 of coat protein complex & original... 0.06 OrthoFinder output from all 47 species
Ore_g10228 No alias subunit beta2 of coat protein complex & original... 0.03 OrthoFinder output from all 47 species
Pp3c2_1810V3.1 Pp3c2_1810 Coatomer, beta\ subunit 0.01 OrthoFinder output from all 47 species
Ppi_g01343 No alias subunit beta2 of coat protein complex & original... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0058.g014985 No alias subunit beta2 of coat protein complex & original... 0.03 OrthoFinder output from all 47 species
Solyc03g120270.4.1 Solyc03g120270 subunit beta2 of coat protein complex 0.07 OrthoFinder output from all 47 species
Solyc06g066730.3.1 Solyc06g066730 subunit beta2 of coat protein complex 0.05 OrthoFinder output from all 47 species
Solyc12g043000.3.1 Solyc12g043000 subunit beta2 of coat protein complex 0.07 OrthoFinder output from all 47 species
Tin_g02168 No alias subunit beta2 of coat protein complex & original... 0.03 OrthoFinder output from all 47 species
Zm00001e014494_P001 Zm00001e014494 subunit beta2 of coat protein complex 0.09 OrthoFinder output from all 47 species
Zm00001e024969_P001 Zm00001e024969 subunit beta2 of coat protein complex 0.09 OrthoFinder output from all 47 species
Zm00001e030001_P002 Zm00001e030001 subunit beta2 of coat protein complex 0.11 OrthoFinder output from all 47 species
Zm00001e036524_P002 Zm00001e036524 subunit beta2 of coat protein complex 0.07 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005198 structural molecule activity IEA Interproscan
BP GO:0006886 intracellular protein transport IEA Interproscan
BP GO:0016192 vesicle-mediated transport IEA Interproscan
CC GO:0030117 membrane coat IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000148 1,3-beta-D-glucan synthase complex IEP HCCA
BP GO:0000271 polysaccharide biosynthetic process IEP HCCA
BP GO:0000290 deadenylation-dependent decapping of nuclear-transcribed mRNA IEP HCCA
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP HCCA
MF GO:0003843 1,3-beta-D-glucan synthase activity IEP HCCA
MF GO:0004427 inorganic diphosphate phosphatase activity IEP HCCA
BP GO:0005975 carbohydrate metabolic process IEP HCCA
BP GO:0005976 polysaccharide metabolic process IEP HCCA
BP GO:0006073 cellular glucan metabolic process IEP HCCA
BP GO:0006074 (1->3)-beta-D-glucan metabolic process IEP HCCA
BP GO:0006075 (1->3)-beta-D-glucan biosynthetic process IEP HCCA
BP GO:0006401 RNA catabolic process IEP HCCA
BP GO:0006402 mRNA catabolic process IEP HCCA
BP GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport IEP HCCA
MF GO:0008047 enzyme activator activity IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0008194 UDP-glycosyltransferase activity IEP HCCA
MF GO:0008236 serine-type peptidase activity IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0009250 glucan biosynthetic process IEP HCCA
MF GO:0009678 pyrophosphate hydrolysis-driven proton transmembrane transporter activity IEP HCCA
BP GO:0009892 negative regulation of metabolic process IEP HCCA
BP GO:0010605 negative regulation of macromolecule metabolic process IEP HCCA
BP GO:0010629 negative regulation of gene expression IEP HCCA
MF GO:0015078 proton transmembrane transporter activity IEP HCCA
MF GO:0015399 primary active transmembrane transporter activity IEP HCCA
CC GO:0016020 membrane IEP HCCA
BP GO:0016051 carbohydrate biosynthetic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
MF GO:0016757 glycosyltransferase activity IEP HCCA
MF GO:0016758 hexosyltransferase activity IEP HCCA
MF GO:0017171 serine hydrolase activity IEP HCCA
BP GO:0019439 aromatic compound catabolic process IEP HCCA
MF GO:0022853 active monoatomic ion transmembrane transporter activity IEP HCCA
CC GO:0030119 AP-type membrane coat adaptor complex IEP HCCA
CC GO:0030120 vesicle coat IEP HCCA
CC GO:0030127 COPII vesicle coat IEP HCCA
CC GO:0030131 clathrin adaptor complex IEP HCCA
MF GO:0030234 enzyme regulator activity IEP HCCA
BP GO:0033692 cellular polysaccharide biosynthetic process IEP HCCA
BP GO:0034220 monoatomic ion transmembrane transport IEP HCCA
BP GO:0034637 cellular carbohydrate biosynthetic process IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
BP GO:0034655 nucleobase-containing compound catabolic process IEP HCCA
MF GO:0035251 UDP-glucosyltransferase activity IEP HCCA
BP GO:0043085 positive regulation of catalytic activity IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0044042 glucan metabolic process IEP HCCA
BP GO:0044093 positive regulation of molecular function IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044262 cellular carbohydrate metabolic process IEP HCCA
BP GO:0044264 cellular polysaccharide metabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
BP GO:0044270 cellular nitrogen compound catabolic process IEP HCCA
MF GO:0046527 glucosyltransferase activity IEP HCCA
BP GO:0046700 heterocycle catabolic process IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
BP GO:0048193 Golgi vesicle transport IEP HCCA
BP GO:0048519 negative regulation of biological process IEP HCCA
BP GO:0050790 regulation of catalytic activity IEP HCCA
BP GO:0051273 beta-glucan metabolic process IEP HCCA
BP GO:0051274 beta-glucan biosynthetic process IEP HCCA
BP GO:0065009 regulation of molecular function IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0098655 monoatomic cation transmembrane transport IEP HCCA
BP GO:0098660 inorganic ion transmembrane transport IEP HCCA
BP GO:0098662 inorganic cation transmembrane transport IEP HCCA
MF GO:0098772 molecular function regulator activity IEP HCCA
CC GO:0098797 plasma membrane protein complex IEP HCCA
BP GO:0110154 RNA decapping IEP HCCA
BP GO:0110156 methylguanosine-cap decapping IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
MF GO:0140677 molecular function activator activity IEP HCCA
BP GO:1901361 organic cyclic compound catabolic process IEP HCCA
CC GO:1902494 catalytic complex IEP HCCA
BP GO:1902600 proton transmembrane transport IEP HCCA
CC GO:1990234 transferase complex IEP HCCA
InterPro domains Description Start Stop
IPR001680 WD40_repeat 91 127
IPR001680 WD40_repeat 132 171
IPR001680 WD40_repeat 177 215
IPR001680 WD40_repeat 59 85
IPR001680 WD40_repeat 220 256
IPR006692 Coatomer_WD-assoc_reg 319 593
No external refs found!