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  5. Spa_g12217

Spa_g12217


Description : mRNA helicase *(RH31) & original description: none


Gene families : OG0001618 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001618_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Spa_g12217
Cluster HCCA: Cluster_56

Target Alias Description ECC score Gene Family Method Actions
Adi_g059684 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g11504 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Aspi01Gene06184.t1 Aspi01Gene06184 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0009.g011827 No alias mRNA helicase *(RH31) & original description: CDS=535-2991 0.03 OrthoFinder output from all 47 species
Cba_g15777 No alias mRNA helicase *(RH31) & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.27G031600.1 Ceric.27G031600 mRNA helicase *(RH31) & original description:... 0.03 OrthoFinder output from all 47 species
Dac_g12157 No alias mRNA helicase *(RH31) & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g13417 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g19403 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01024652001 No alias Probable DEAD-box ATP-dependent RNA helicase 48... 0.04 OrthoFinder output from all 47 species
LOC_Os06g33520.1 LOC_Os06g33520 DEAD-box ATP-dependent RNA helicase 31 OS=Oryza sativa... 0.02 OrthoFinder output from all 47 species
Len_g20661 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g02485 No alias mRNA helicase *(RH31) & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g10300 No alias mRNA helicase *(RH31) & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g01045 No alias mRNA helicase *(RH31) & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g13628 No alias mRNA helicase *(RH31) & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g12179 No alias mRNA helicase *(RH31) & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0005634 nucleus IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006334 nucleosome assembly IEP HCCA
BP GO:0006338 chromatin remodeling IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006400 tRNA modification IEP HCCA
BP GO:0008033 tRNA processing IEP HCCA
MF GO:0008173 RNA methyltransferase activity IEP HCCA
MF GO:0008175 tRNA methyltransferase activity IEP HCCA
MF GO:0008176 tRNA (guanine-N7-)-methyltransferase activity IEP HCCA
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
MF GO:0016423 tRNA (guanine) methyltransferase activity IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0034728 nucleosome organization IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0065004 protein-DNA complex assembly IEP HCCA
BP GO:0071824 protein-DNA complex subunit organization IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
InterPro domains Description Start Stop
IPR011545 DEAD/DEAH_box_helicase_dom 359 533
IPR001650 Helicase_C 577 686
No external refs found!