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  5. Spa_g10253

Spa_g10253


Description : not classified & original description: none


Gene families : OG0003138 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003138_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Spa_g10253
Cluster HCCA: Cluster_13

Target Alias Description ECC score Gene Family Method Actions
Adi_g080497 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene34069.t1 Aspi01Gene34069 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0041.g026802 No alias not classified & original description: CDS=104-1147 0.02 OrthoFinder output from all 47 species
Cba_g26220 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g62354 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.01G021400.1 Ceric.01G021400 not classified & original description: pacid=50591313... 0.03 OrthoFinder output from all 47 species
Dac_g11761 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g02073 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g29277 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g30651 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Nbi_g12048 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0046872 metal ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0004820 glycine-tRNA ligase activity IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
CC GO:0005840 ribosome IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006426 glycyl-tRNA aminoacylation IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
MF GO:0019843 rRNA binding IEP HCCA
MF GO:0031072 heat shock protein binding IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0043603 amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
MF GO:0051082 unfolded protein binding IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR000571 Znf_CCCH 309 333
No external refs found!