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  5. Spa_g07883

Spa_g07883 (ATGCN1, GCN1)


Aliases : ATGCN1, GCN1

Description : not classified & original description: none


Gene families : OG0003164 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003164_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Spa_g07883
Cluster HCCA: Cluster_56

Target Alias Description ECC score Gene Family Method Actions
Adi_g000508 ATGCN1, GCN1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g05138 ATGCN1, GCN1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g01343 ATGCN1, GCN1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g09935 ATGCN1, GCN1 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dde_g03912 ATGCN1, GCN1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g06018 ATGCN1, GCN1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g01954 ATGCN1, GCN1 not classified & original description: none 0.07 OrthoFinder output from all 47 species
Nbi_g04312 ATGCN1, GCN1 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ppi_g18687 ATGCN1, GCN1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0063.g015649 ATGCN1, GCN1 not classified & original description: CDS=120-2102 0.03 OrthoFinder output from all 47 species
Solyc11g069090.2.1 ATGCN1, GCN1,... ABC transporter F family member 1 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP HCCA
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP HCCA
BP GO:0000398 mRNA splicing, via spliceosome IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
CC GO:0005956 protein kinase CK2 complex IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
MF GO:0019207 kinase regulator activity IEP HCCA
MF GO:0019887 protein kinase regulator activity IEP HCCA
CC GO:0030117 membrane coat IEP HCCA
CC GO:0030118 clathrin coat IEP HCCA
CC GO:0030120 vesicle coat IEP HCCA
CC GO:0030125 clathrin vesicle coat IEP HCCA
CC GO:0030130 clathrin coat of trans-Golgi network vesicle IEP HCCA
CC GO:0030132 clathrin coat of coated pit IEP HCCA
MF GO:0030234 enzyme regulator activity IEP HCCA
CC GO:0030532 small nuclear ribonucleoprotein complex IEP HCCA
MF GO:0031072 heat shock protein binding IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
CC GO:0046540 U4/U6 x U5 tri-snRNP complex IEP HCCA
MF GO:0051082 unfolded protein binding IEP HCCA
CC GO:0061695 transferase complex, transferring phosphorus-containing groups IEP HCCA
CC GO:0097525 spliceosomal snRNP complex IEP HCCA
CC GO:0097526 spliceosomal tri-snRNP complex IEP HCCA
MF GO:0098772 molecular function regulator activity IEP HCCA
CC GO:0098797 plasma membrane protein complex IEP HCCA
CC GO:0120114 Sm-like protein family complex IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
CC GO:1902494 catalytic complex IEP HCCA
CC GO:1902554 serine/threonine protein kinase complex IEP HCCA
CC GO:1902911 protein kinase complex IEP HCCA
CC GO:1990234 transferase complex IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR032781 ABC_tran_Xtn 284 360
IPR003439 ABC_transporter-like_ATP-bd 401 531
IPR003439 ABC_transporter-like_ATP-bd 90 245
No external refs found!