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  5. Spa_g06176

Spa_g06176


Description : scaffold nucleoporin of nuclear pore complex *(NUP205) & original description: none


Gene families : OG0003848 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003848_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Spa_g06176

Target Alias Description ECC score Gene Family Method Actions
Adi_g011594 No alias scaffold nucleoporin of nuclear pore complex *(NUP205) &... 0.03 OrthoFinder output from all 47 species
Als_g05767 No alias scaffold nucleoporin of nuclear pore complex *(NUP205) &... 0.03 OrthoFinder output from all 47 species
Ceric.36G007000.1 Ceric.36G007000 scaffold nucleoporin of nuclear pore complex *(NUP205) &... 0.03 OrthoFinder output from all 47 species
Cre13.g578100 No alias No description available 0.03 OrthoFinder output from all 47 species
Dcu_g12341 No alias scaffold nucleoporin of nuclear pore complex *(NUP205) &... 0.04 OrthoFinder output from all 47 species
Gb_31636 No alias NUP205 scaffold nucleoporin of nuclear pore complex 0.03 OrthoFinder output from all 47 species
LOC_Os02g10790.1 LOC_Os02g10790 NUP205 scaffold nucleoporin of nuclear pore complex 0.03 OrthoFinder output from all 47 species
Nbi_g02508 No alias scaffold nucleoporin of nuclear pore complex *(NUP205) &... 0.04 OrthoFinder output from all 47 species
Ore_g17338 No alias scaffold nucleoporin of nuclear pore complex *(NUP205) &... 0.02 OrthoFinder output from all 47 species
Pp3c20_13260V3.1 Pp3c20_13260 Protein of unknown function (DUF3414) 0.01 OrthoFinder output from all 47 species
Solyc12g006480.2.1 Solyc12g006480 NUP205 scaffold nucleoporin of nuclear pore complex 0.02 OrthoFinder output from all 47 species
Zm00001e014006_P001 Zm00001e014006 NUP205 scaffold nucleoporin of nuclear pore complex 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0005643 nuclear pore IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0001181 RNA polymerase I general transcription initiation factor activity IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0004175 endopeptidase activity IEP HCCA
MF GO:0004222 metalloendopeptidase activity IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
CC GO:0005634 nucleus IEP HCCA
BP GO:0006352 DNA-templated transcription initiation IEP HCCA
BP GO:0006361 transcription initiation at RNA polymerase I promoter IEP HCCA
BP GO:0006479 protein methylation IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
MF GO:0008170 N-methyltransferase activity IEP HCCA
BP GO:0008213 protein alkylation IEP HCCA
MF GO:0008237 metallopeptidase activity IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
MF GO:0008276 protein methyltransferase activity IEP HCCA
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
MF GO:0016278 lysine N-methyltransferase activity IEP HCCA
MF GO:0016279 protein-lysine N-methyltransferase activity IEP HCCA
BP GO:0016567 protein ubiquitination IEP HCCA
BP GO:0016570 histone modification IEP HCCA
BP GO:0016571 histone methylation IEP HCCA
BP GO:0018022 peptidyl-lysine methylation IEP HCCA
MF GO:0018024 histone lysine N-methyltransferase activity IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018205 peptidyl-lysine modification IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
BP GO:0032259 methylation IEP HCCA
BP GO:0032446 protein modification by small protein conjugation IEP HCCA
BP GO:0034968 histone lysine methylation IEP HCCA
MF GO:0042054 histone methyltransferase activity IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0043414 macromolecule methylation IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
MF GO:0140223 general transcription initiation factor activity IEP HCCA
InterPro domains Description Start Stop
IPR021827 Nup186/Nup192/Nup205 8 1640
No external refs found!