Spa_g04580

Description : regulatory protein *(BDR) involved in RNA polymerase-II transcription & original description: none

Gene families : OG0002847 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002847_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Spa_g04580
Cluster	HCCA: Cluster_84

Target	Alias	Description	ECC score	Gene Family Method
AT5G25520	No alias	SPOC domain / Transcription elongation factor S-II protein	0.03	OrthoFinder output from all 47 species
Adi_g036304	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Adi_g081371	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Ala_g02676	No alias	regulatory protein *(BDR) involved in RNA polymerase-II...	0.02	OrthoFinder output from all 47 species
Als_g29206	No alias	regulatory protein *(BDR) involved in RNA polymerase-II...	0.04	OrthoFinder output from all 47 species
Aop_g20897	No alias	regulatory protein *(BDR) involved in RNA polymerase-II...	0.04	OrthoFinder output from all 47 species
Ceric.07G056700.1	Ceric.07G056700	regulatory protein *(BDR) involved in RNA polymerase-II...	0.07	OrthoFinder output from all 47 species
GSVIVT01035723001	No alias	No description available	0.04	OrthoFinder output from all 47 species
Len_g09763	No alias	regulatory protein *(BDR) involved in RNA polymerase-II...	0.04	OrthoFinder output from all 47 species
MA_10426543g0010	No alias	no hits & (original description: none)	0.02	OrthoFinder output from all 47 species
MA_10432543g0010	No alias	no hits & (original description: none)	0.03	OrthoFinder output from all 47 species
MA_2452g0010	No alias	no hits & (original description: none)	0.03	OrthoFinder output from all 47 species
Mp4g01870.1	No alias	no hits & (original description: none)	0.04	OrthoFinder output from all 47 species
Ore_g17449	No alias	regulatory protein *(BDR) involved in RNA polymerase-II...	0.03	OrthoFinder output from all 47 species
Pir_g11843	No alias	regulatory protein *(BDR) involved in RNA polymerase-II...	0.03	OrthoFinder output from all 47 species
Ppi_g39270	No alias	regulatory protein *(BDR) involved in RNA polymerase-II...	0.07	OrthoFinder output from all 47 species
Sam_g36170	No alias	regulatory protein *(BDR) involved in RNA polymerase-II...	0.04	OrthoFinder output from all 47 species
Solyc07g007850.2.1	Solyc07g007850	no hits & (original description: none)	0.04	OrthoFinder output from all 47 species
Zm00001e024973_P001	Zm00001e024973	no hits & (original description: none)	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006351	DNA-templated transcription	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
BP	GO:0032774	RNA biosynthetic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034654	nucleobase-containing compound biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:0097659	nucleic acid-templated transcription	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003824	catalytic activity	IEP	HCCA
MF	GO:0004386	helicase activity	IEP	HCCA
MF	GO:0004518	nuclease activity	IEP	HCCA
MF	GO:0004519	endonuclease activity	IEP	HCCA
MF	GO:0004521	endoribonuclease activity	IEP	HCCA
MF	GO:0004525	ribonuclease III activity	IEP	HCCA
MF	GO:0004540	ribonuclease activity	IEP	HCCA
MF	GO:0004594	pantothenate kinase activity	IEP	HCCA
MF	GO:0004842	ubiquitin-protein transferase activity	IEP	HCCA
BP	GO:0006164	purine nucleotide biosynthetic process	IEP	HCCA
BP	GO:0009152	purine ribonucleotide biosynthetic process	IEP	HCCA
BP	GO:0009165	nucleotide biosynthetic process	IEP	HCCA
BP	GO:0009260	ribonucleotide biosynthetic process	IEP	HCCA
BP	GO:0015936	coenzyme A metabolic process	IEP	HCCA
BP	GO:0015937	coenzyme A biosynthetic process	IEP	HCCA
MF	GO:0016301	kinase activity	IEP	HCCA
MF	GO:0016740	transferase activity	IEP	HCCA
MF	GO:0016773	phosphotransferase activity, alcohol group as acceptor	IEP	HCCA
MF	GO:0016891	endoribonuclease activity, producing 5'-phosphomonoesters	IEP	HCCA
MF	GO:0016893	endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters	IEP	HCCA
MF	GO:0019787	ubiquitin-like protein transferase activity	IEP	HCCA
BP	GO:0022607	cellular component assembly	IEP	HCCA
MF	GO:0032296	double-stranded RNA-specific ribonuclease activity	IEP	HCCA
BP	GO:0033865	nucleoside bisphosphate metabolic process	IEP	HCCA
BP	GO:0033866	nucleoside bisphosphate biosynthetic process	IEP	HCCA
BP	GO:0033875	ribonucleoside bisphosphate metabolic process	IEP	HCCA
BP	GO:0034030	ribonucleoside bisphosphate biosynthetic process	IEP	HCCA
BP	GO:0034032	purine nucleoside bisphosphate metabolic process	IEP	HCCA
BP	GO:0034033	purine nucleoside bisphosphate biosynthetic process	IEP	HCCA
BP	GO:0043248	proteasome assembly	IEP	HCCA
BP	GO:0043933	protein-containing complex organization	IEP	HCCA
BP	GO:0046390	ribose phosphate biosynthetic process	IEP	HCCA
MF	GO:0060090	molecular adaptor activity	IEP	HCCA
BP	GO:0065003	protein-containing complex assembly	IEP	HCCA
BP	GO:0072522	purine-containing compound biosynthetic process	IEP	HCCA
BP	GO:0090407	organophosphate biosynthetic process	IEP	HCCA
MF	GO:0140640	catalytic activity, acting on a nucleic acid	IEP	HCCA
BP	GO:1901137	carbohydrate derivative biosynthetic process	IEP	HCCA
BP	GO:1901293	nucleoside phosphate biosynthetic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR012921	SPOC_C	526	673
IPR003618	TFIIS_cen_dom	208	299

External Links

No external refs found!

Spa_g04580

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation