1. Home
  2. Species
  3. Stenochlaena palustris
  4. Sequence
  5. Spa_g01167

Spa_g01167 (ATROPGEF1, ROPGEF1)


Aliases : ATROPGEF1, ROPGEF1

Description : RopGEF guanine nucleotide exchange factor *(PRONE) & original description: none


Gene families : OG0000396 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000396_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Spa_g01167
Cluster HCCA: Cluster_9

Target Alias Description ECC score Gene Family Method Actions
Als_g23835 ATROPGEF1, ROPGEF1 RopGEF guanine nucleotide exchange factor *(PRONE) &... 0.03 OrthoFinder output from all 47 species
Ceric.1Z028300.1 ROPGEF7,... RopGEF guanine nucleotide exchange factor *(PRONE) &... 0.03 OrthoFinder output from all 47 species
GSVIVT01026930001 ROPGEF3, ATROPGEF3 Multi-process regulation.Rop GTPase regulatory... 0.02 OrthoFinder output from all 47 species
Gb_04468 ATROPGEF9, ROPGEF9 PRONE-type RopGEF guanine nucleotide exchange factor 0.03 OrthoFinder output from all 47 species
Gb_24552 ROPGEF14, ATROPGEF14 PRONE-type RopGEF guanine nucleotide exchange factor 0.02 OrthoFinder output from all 47 species
Gb_34956 ATROPGEF1, ROPGEF1 PRONE-type RopGEF guanine nucleotide exchange factor 0.03 OrthoFinder output from all 47 species
Len_g42591 ROPGEF7, ATROPGEF7 RopGEF guanine nucleotide exchange factor *(PRONE) &... 0.03 OrthoFinder output from all 47 species
Pir_g56461 ATROPGEF1, ROPGEF1 RopGEF guanine nucleotide exchange factor *(PRONE) &... 0.03 OrthoFinder output from all 47 species
Pnu_g19384 ATROPGEF5, ROPGEF5 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g13603 No alias RopGEF guanine nucleotide exchange factor *(PRONE) &... 0.02 OrthoFinder output from all 47 species
Sam_g25517 No alias RopGEF guanine nucleotide exchange factor *(PRONE) &... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005085 guanyl-nucleotide exchange factor activity IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004519 endonuclease activity IEP HCCA
MF GO:0004521 endoribonuclease activity IEP HCCA
MF GO:0004523 RNA-DNA hybrid ribonuclease activity IEP HCCA
MF GO:0004540 ribonuclease activity IEP HCCA
MF GO:0008171 O-methyltransferase activity IEP HCCA
MF GO:0016891 endoribonuclease activity, producing 5'-phosphomonoesters IEP HCCA
MF GO:0016893 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP HCCA
InterPro domains Description Start Stop
IPR005512 PRONE_dom 125 487
No external refs found!