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  5. Ore_g43540

Ore_g43540 (UBP12)


Aliases : UBP12

Description : not classified & original description: none


Gene families : OG0005085 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005085_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ore_g43540

Target Alias Description ECC score Gene Family Method Actions
Adi_g107348 UBP12 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g06394 UBP12 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene23681.t1 Aspi01Gene23681 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene57571.t2 Aspi01Gene57571 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0006.g010362 UBP12 not classified & original description: CDS=350-7828 0.05 OrthoFinder output from all 47 species
Cba_g11482 UBP13 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.15G071100.1 UBP12, Ceric.15G071100 not classified & original description: pacid=50640759... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00021281.14 No alias Ubiquitin carboxyl-terminal hydrolase 13 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Dac_g27627 UBP12 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g23057 UBP12 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g12126 UBP12 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g18112 UBP12 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Gb_35991 UBP12 Ubiquitin carboxyl-terminal hydrolase 12 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Len_g13952 UBP13 not classified & original description: none 0.04 OrthoFinder output from all 47 species
MA_1628982g0010 No alias no hits & (original description: none) 0.01 OrthoFinder output from all 47 species
MA_17762g0010 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Msp_g42753 UBP12 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g07531 UBP12 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g12171 UBP12 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0112.g020740 UBP12 not classified & original description: CDS=294-7754 0.02 OrthoFinder output from all 47 species
Smo447032 UBP12 Protein degradation.peptidase families.cysteine-type... 0.03 OrthoFinder output from all 47 species
Spa_g09112 UBP12 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g13986 UBP12 not classified & original description: none 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0004843 cysteine-type deubiquitinase activity IEA Interproscan
BP GO:0016579 protein deubiquitination IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0004819 glutamine-tRNA ligase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
CC GO:0005886 plasma membrane IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006425 glutaminyl-tRNA aminoacylation IEP HCCA
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
BP GO:0009306 protein secretion IEP HCCA
BP GO:0009987 cellular process IEP HCCA
MF GO:0015299 obsolete solute:proton antiporter activity IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0019899 enzyme binding IEP HCCA
BP GO:0019941 modification-dependent protein catabolic process IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0031625 ubiquitin protein ligase binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0032940 secretion by cell IEP HCCA
BP GO:0035592 establishment of protein localization to extracellular region IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0043632 modification-dependent macromolecule catabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
MF GO:0044389 ubiquitin-like protein ligase binding IEP HCCA
BP GO:0046903 secretion IEP HCCA
BP GO:0051603 proteolysis involved in protein catabolic process IEP HCCA
BP GO:0071692 protein localization to extracellular region IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
BP GO:0140352 export from cell IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR021905 DUF3517 1804 2055
IPR001394 Peptidase_C19_UCH 1236 1608
No external refs found!