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  5. Ore_g27282

Ore_g27282 (ATCPL1, CPL1, FRY2)


Aliases : ATCPL1, CPL1, FRY2

Description : subcluster CPL phosphatase & original description: none


Gene families : OG0002263 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002263_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ore_g27282
Cluster HCCA: Cluster_20

Target Alias Description ECC score Gene Family Method Actions
AT5G01270 CPL2, ATCPL2 carboxyl-terminal domain (ctd) phosphatase-like 2 0.03 OrthoFinder output from all 47 species
Adi_g010875 ATCPL1, CPL1, FRY2 subcluster CPL phosphatase & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g12939 ATCPL1, CPL1, FRY2 subcluster CPL phosphatase & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene27053.t1 ATCPL1, CPL1,... group-I RNA polymerase-II phosphatase & original... 0.02 OrthoFinder output from all 47 species
Cba_g12689 ATCPL1, CPL1, FRY2 subcluster CPL phosphatase & original description: none 0.08 OrthoFinder output from all 47 species
Cba_g34635 ATCPL1, CPL1, FRY2 subcluster CPL phosphatase & original description: none 0.07 OrthoFinder output from all 47 species
Ceric.03G049400.1 ATCPL1, CPL1,... subcluster CPL phosphatase & original description:... 0.02 OrthoFinder output from all 47 species
Ceric.07G074800.1 ATCPL1, CPL1,... subcluster CPL phosphatase & original description:... 0.02 OrthoFinder output from all 47 species
Dcu_g07780 ATCPL1, CPL1, FRY2 subcluster CPL phosphatase & original description: none 0.02 OrthoFinder output from all 47 species
LOC_Os01g63820.1 CPL2, ATCPL2,... RNA polymerase-II phosphatase. CPL phosphatase 0.02 OrthoFinder output from all 47 species
LOC_Os02g42600.1 ATCPL1, CPL1,... RNA polymerase-II phosphatase. CPL phosphatase 0.04 OrthoFinder output from all 47 species
Zm00001e019228_P002 CPL2, ATCPL2,... RNA polymerase-II phosphatase. CPL phosphatase 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0004827 proline-tRNA ligase activity IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
BP GO:0006082 organic acid metabolic process IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006433 prolyl-tRNA aminoacylation IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
BP GO:0019752 carboxylic acid metabolic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
BP GO:0043436 oxoacid metabolic process IEP HCCA
BP GO:0044281 small molecule metabolic process IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
InterPro domains Description Start Stop
IPR004274 FCP1_dom 256 367
IPR014720 dsRBD_dom 706 766
IPR014720 dsRBD_dom 847 909
No external refs found!