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  5. Ore_g07693

Ore_g07693


Description : helicase UAP56 & original description: none


Gene families : OG0002123 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002123_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ore_g07693

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00036p00225190 evm_27.TU.AmTr_v1... RNA processing.messenger ribonucleoprotein particle... 0.02 OrthoFinder output from all 47 species
AT5G11170 No alias DEAD/DEAH box RNA helicase family protein 0.03 OrthoFinder output from all 47 species
Adi_g085034 No alias helicase UAP56 & original description: none 0.04 OrthoFinder output from all 47 species
Aev_g13080 No alias helicase UAP56 & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g30475 No alias helicase UAP56 & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g07010 No alias helicase UAP56 & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g77168 No alias helicase UAP56 & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g11077 No alias helicase UAP56 & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01035843001 No alias RNA processing.messenger ribonucleoprotein particle... 0.04 OrthoFinder output from all 47 species
Gb_14863 No alias RNA helicase (Sub2). helicase component UAP56 of... 0.04 OrthoFinder output from all 47 species
Len_g56014 No alias helicase UAP56 & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g13215 No alias helicase UAP56 & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g07151 No alias helicase UAP56 & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g49064 No alias helicase UAP56 & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g51328 No alias helicase UAP56 & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e026684_P001 Zm00001e026684 RNA helicase (Sub2). helicase component UAP56 of... 0.03 OrthoFinder output from all 47 species
Zm00001e027715_P001 Zm00001e027715 RNA helicase (Sub2). helicase component UAP56 of... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000439 transcription factor TFIIH core complex IEP HCCA
MF GO:0001671 ATPase activator activity IEP HCCA
MF GO:0003682 chromatin binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0004556 alpha-amylase activity IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0004843 cysteine-type deubiquitinase activity IEP HCCA
CC GO:0005667 transcription regulator complex IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006289 nucleotide-excision repair IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006338 chromatin remodeling IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0008234 cysteine-type peptidase activity IEP HCCA
MF GO:0016160 amylase activity IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
MF GO:0019783 ubiquitin-like protein peptidase activity IEP HCCA
MF GO:0031491 nucleosome binding IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
MF GO:0044877 protein-containing complex binding IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
CC GO:0090575 RNA polymerase II transcription regulator complex IEP HCCA
MF GO:0098772 molecular function regulator activity IEP HCCA
MF GO:0101005 deubiquitinase activity IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
MF GO:0140677 molecular function activator activity IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR001650 Helicase_C 277 384
IPR011545 DEAD/DEAH_box_helicase_dom 72 237
No external refs found!