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  5. Ore_g06557

Ore_g06557


Description : not classified & original description: none


Gene families : OG0000142 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000142_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ore_g06557

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00019p00238660 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g20300,... 0.02 OrthoFinder output from all 47 species
Aev_g01020 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g08644 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g17218 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g02334 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0333.g065453 No alias not classified & original description: CDS=1-1836 0.02 OrthoFinder output from all 47 species
Cba_g20505 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000737.24 No alias No description available 0.04 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020723.110 No alias No description available 0.01 OrthoFinder output from all 47 species
Dac_g07047 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Dcu_g09454 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g09971 No alias group-II intron mitochondrial splicing factor *(MISF68)... 0.02 OrthoFinder output from all 47 species
Dcu_g34156 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g11888 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01008815001 No alias Pentatricopeptide repeat-containing protein At1g77360,... 0.01 OrthoFinder output from all 47 species
GSVIVT01015982001 No alias Pentatricopeptide repeat-containing protein At1g80880,... 0.01 OrthoFinder output from all 47 species
GSVIVT01017111001 No alias Pentatricopeptide repeat-containing protein At3g16010... 0.01 OrthoFinder output from all 47 species
GSVIVT01027384001 No alias Pentatricopeptide repeat-containing protein At1g80550,... 0.03 OrthoFinder output from all 47 species
GSVIVT01027388001 No alias Pentatricopeptide repeat-containing protein At1g80550,... 0.01 OrthoFinder output from all 47 species
Gb_21477 No alias Pentatricopeptide repeat-containing protein At3g53700,... 0.04 OrthoFinder output from all 47 species
MA_69152g0010 MEE40 Pentatricopeptide repeat-containing protein At3g53700,... 0.04 OrthoFinder output from all 47 species
MA_8206159g0010 No alias Pentatricopeptide repeat-containing protein At5g15010,... 0.01 OrthoFinder output from all 47 species
MA_92274g0010 No alias Pentatricopeptide repeat-containing protein At1g63400... 0.04 OrthoFinder output from all 47 species
MA_933431g0010 No alias Pentatricopeptide repeat-containing protein At1g20300,... 0.01 OrthoFinder output from all 47 species
Pir_g14223 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g13701 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0059.g015082 No alias not classified & original description: CDS=1-1587 0.02 OrthoFinder output from all 47 species
Sam_g12414 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g24475 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Smo126152 No alias Pentatricopeptide repeat-containing protein At1g09410,... 0.04 OrthoFinder output from all 47 species
Spa_g12536 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e005446_P003 Zm00001e005446 group-II intron mitochondrial splicing factor (MISF68) 0.01 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004175 endopeptidase activity IEP HCCA
MF GO:0004177 aminopeptidase activity IEP HCCA
MF GO:0004222 metalloendopeptidase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006164 purine nucleotide biosynthetic process IEP HCCA
BP GO:0006508 proteolysis IEP HCCA
BP GO:0006754 ATP biosynthetic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0008233 peptidase activity IEP HCCA
MF GO:0008237 metallopeptidase activity IEP HCCA
MF GO:0008238 exopeptidase activity IEP HCCA
BP GO:0009141 nucleoside triphosphate metabolic process IEP HCCA
BP GO:0009142 nucleoside triphosphate biosynthetic process IEP HCCA
BP GO:0009144 purine nucleoside triphosphate metabolic process IEP HCCA
BP GO:0009145 purine nucleoside triphosphate biosynthetic process IEP HCCA
BP GO:0009150 purine ribonucleotide metabolic process IEP HCCA
BP GO:0009152 purine ribonucleotide biosynthetic process IEP HCCA
BP GO:0009165 nucleotide biosynthetic process IEP HCCA
BP GO:0009199 ribonucleoside triphosphate metabolic process IEP HCCA
BP GO:0009201 ribonucleoside triphosphate biosynthetic process IEP HCCA
BP GO:0009205 purine ribonucleoside triphosphate metabolic process IEP HCCA
BP GO:0009206 purine ribonucleoside triphosphate biosynthetic process IEP HCCA
BP GO:0009259 ribonucleotide metabolic process IEP HCCA
BP GO:0009260 ribonucleotide biosynthetic process IEP HCCA
MF GO:0010181 FMN binding IEP HCCA
MF GO:0015078 proton transmembrane transporter activity IEP HCCA
BP GO:0015986 proton motive force-driven ATP synthesis IEP HCCA
MF GO:0016462 pyrophosphatase activity IEP HCCA
MF GO:0016614 oxidoreductase activity, acting on CH-OH group of donors IEP HCCA
MF GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP HCCA
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP HCCA
MF GO:0016887 ATP hydrolysis activity IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0017111 ribonucleoside triphosphate phosphatase activity IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
BP GO:0019693 ribose phosphate metabolic process IEP HCCA
MF GO:0019842 vitamin binding IEP HCCA
MF GO:0030170 pyridoxal phosphate binding IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
CC GO:0033177 proton-transporting two-sector ATPase complex, proton-transporting domain IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
CC GO:0045263 proton-transporting ATP synthase complex, coupling factor F(o) IEP HCCA
BP GO:0046034 ATP metabolic process IEP HCCA
BP GO:0046390 ribose phosphate biosynthetic process IEP HCCA
MF GO:0051287 NAD binding IEP HCCA
MF GO:0070279 vitamin B6 binding IEP HCCA
BP GO:0072522 purine-containing compound biosynthetic process IEP HCCA
BP GO:0090407 organophosphate biosynthetic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
BP GO:1901137 carbohydrate derivative biosynthetic process IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1901293 nucleoside phosphate biosynthetic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR033443 PPR_long 765 880
IPR002885 Pentatricopeptide_repeat 699 753
IPR002885 Pentatricopeptide_repeat 976 1032
IPR002885 Pentatricopeptide_repeat 1130 1178
IPR002885 Pentatricopeptide_repeat 291 339
IPR002885 Pentatricopeptide_repeat 501 549
IPR002885 Pentatricopeptide_repeat 189 229
IPR002885 Pentatricopeptide_repeat 437 479
IPR002885 Pentatricopeptide_repeat 889 916
IPR002885 Pentatricopeptide_repeat 644 672
IPR002885 Pentatricopeptide_repeat 364 392
IPR002885 Pentatricopeptide_repeat 1061 1090
IPR002885 Pentatricopeptide_repeat 566 599
IPR002885 Pentatricopeptide_repeat 601 633
No external refs found!