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  5. Ore_g05485

Ore_g05485


Description : assembly factor involved in RuBisCo assembly *(RAF1) & original description: none


Gene families : OG0006523 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006523_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ore_g05485
Cluster HCCA: Cluster_6

Target Alias Description ECC score Gene Family Method Actions
AT3G04550 No alias unknown protein; INVOLVED IN: biological_process... 0.05 OrthoFinder output from all 47 species
AT5G28500 No alias unknown protein; FUNCTIONS IN: molecular_function... 0.02 OrthoFinder output from all 47 species
Adi_g075453 No alias assembly factor involved in RuBisCo assembly *(RAF1) &... 0.06 OrthoFinder output from all 47 species
Aev_g05322 No alias assembly factor involved in RuBisCo assembly *(RAF1) &... 0.04 OrthoFinder output from all 47 species
Aspi01Gene33663.t1 Aspi01Gene33663 assembly factor involved in RuBisCo assembly *(RAF1) &... 0.03 OrthoFinder output from all 47 species
Cba_g07506 No alias assembly factor involved in RuBisCo assembly *(RAF1) &... 0.02 OrthoFinder output from all 47 species
Ceric.03G026300.1 Ceric.03G026300 assembly factor involved in RuBisCo assembly *(RAF1) &... 0.03 OrthoFinder output from all 47 species
Dac_g13000 No alias assembly factor involved in RuBisCo assembly *(RAF1) &... 0.04 OrthoFinder output from all 47 species
Ehy_g23264 No alias assembly factor involved in RuBisCo assembly *(RAF1) &... 0.03 OrthoFinder output from all 47 species
LOC_Os10g30870.1 LOC_Os10g30870 RAF1 assembly factor involved in RuBisCo assembly 0.02 OrthoFinder output from all 47 species
MA_184421g0020 No alias RAF1 assembly factor involved in RuBisCo assembly 0.07 OrthoFinder output from all 47 species
Mp1g20960.1 No alias RAF1 assembly factor involved in RuBisCo assembly 0.02 OrthoFinder output from all 47 species
Nbi_g09141 No alias assembly factor involved in RuBisCo assembly *(RAF1) &... 0.02 OrthoFinder output from all 47 species
Pnu_g06513 No alias assembly factor involved in RuBisCo assembly *(RAF1) &... 0.05 OrthoFinder output from all 47 species
Smo441634 No alias Photosynthesis.calvin cycle.ribulose-1,5-bisphosphat... 0.02 OrthoFinder output from all 47 species
Solyc11g006060.2.1 Solyc11g006060 RAF1 assembly factor involved in RuBisCo assembly 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006298 mismatch repair IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0030983 mismatched DNA binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR040858 Raf1_C 286 433
IPR040781 Raf1_HTH 93 152
IPR041358 Raf1_N 164 269
No external refs found!