Ore_g04065 (RCA)

Aliases : RCA

Description : ATP-dependent activase involved in RuBisCo regulation & original description: none

Gene families : OG0001509 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001509_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Ore_g04065
Cluster	HCCA: Cluster_127

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00012p00255830	RCA,...	Photosynthesis.calvin cycle.ribulose-1,5-bisphosphat...	0.06	OrthoFinder output from all 47 species
AT2G39730	RCA	rubisco activase	0.08	OrthoFinder output from all 47 species
Adi_g007841	RCA	ATP-dependent activase involved in RuBisCo regulation &...	0.02	OrthoFinder output from all 47 species
Adi_g060599	RCA	ATP-dependent activase involved in RuBisCo regulation &...	0.04	OrthoFinder output from all 47 species
Adi_g079810	RCA	ATP-dependent activase involved in RuBisCo regulation &...	0.05	OrthoFinder output from all 47 species
Aev_g12706	RCA	ATP-dependent activase involved in RuBisCo regulation &...	0.06	OrthoFinder output from all 47 species
Aev_g40934	RCA	ATP-dependent activase involved in RuBisCo regulation &...	0.03	OrthoFinder output from all 47 species
Ala_g04126	RCA	ATP-dependent activase involved in RuBisCo regulation &...	0.06	OrthoFinder output from all 47 species
Ala_g06980	RCA	ATP-dependent activase involved in RuBisCo regulation &...	0.06	OrthoFinder output from all 47 species
Als_g03717	RCA	ATP-dependent activase involved in RuBisCo regulation &...	0.08	OrthoFinder output from all 47 species
Als_g07530	RCA	ATP-dependent activase involved in RuBisCo regulation &...	0.06	OrthoFinder output from all 47 species
Als_g63065	RCA	ATP-dependent activase involved in RuBisCo regulation &...	0.02	OrthoFinder output from all 47 species
Aob_g25713	RCA	ATP-dependent activase involved in RuBisCo regulation &...	0.07	OrthoFinder output from all 47 species
Aop_g12628	RCA	ATP-dependent activase involved in RuBisCo regulation &...	0.08	OrthoFinder output from all 47 species
Aop_g12629	RCA	ATP-dependent activase involved in RuBisCo regulation &...	0.09	OrthoFinder output from all 47 species
Azfi_s0001.g000197	RCA	ATP-dependent activase involved in RuBisCo regulation &...	0.09	OrthoFinder output from all 47 species
Azfi_s0007.g011067	RCA	ATP-dependent activase involved in RuBisCo regulation &...	0.04	OrthoFinder output from all 47 species
Cba_g02574	RCA	ATP-dependent activase involved in RuBisCo regulation &...	0.08	OrthoFinder output from all 47 species
Cba_g15232	RCA	ATP-dependent activase involved in RuBisCo regulation &...	0.06	OrthoFinder output from all 47 species
Cba_g69697	RCA	ATP-dependent activase involved in RuBisCo regulation &...	0.06	OrthoFinder output from all 47 species
Ceric.12G094300.1	RCA, Ceric.12G094300	ATP-dependent activase involved in RuBisCo regulation &...	0.07	OrthoFinder output from all 47 species
Ceric.12G094500.1	RCA, Ceric.12G094500	ATP-dependent activase involved in RuBisCo regulation &...	0.09	OrthoFinder output from all 47 species
Ceric.12G094700.1	RCA, Ceric.12G094700	ATP-dependent activase involved in RuBisCo regulation &...	0.07	OrthoFinder output from all 47 species
Ceric.12G094800.1	RCA, Ceric.12G094800	ATP-dependent activase involved in RuBisCo regulation &...	0.07	OrthoFinder output from all 47 species
Ceric.28G001900.1	RCA, Ceric.28G001900	ATP-dependent activase involved in RuBisCo regulation &...	0.09	OrthoFinder output from all 47 species
Ceric.28G002100.1	RCA, Ceric.28G002100	ATP-dependent activase involved in RuBisCo regulation &...	0.08	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00020848.90	RCA	Ribulose bisphosphate carboxylase/oxygenase activase,...	0.03	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00020848.91	RCA	Ribulose bisphosphate carboxylase/oxygenase activase,...	0.03	OrthoFinder output from all 47 species
Cre04.g229300	RCA	Photosynthesis.calvin cycle.ribulose-1,5-bisphosphat...	0.05	OrthoFinder output from all 47 species
Dac_g08800	RCA	ATP-dependent activase involved in RuBisCo regulation &...	0.03	OrthoFinder output from all 47 species
Dac_g13179	RCA	ATP-dependent activase involved in RuBisCo regulation &...	0.07	OrthoFinder output from all 47 species
Dcu_g18051	RCA	ATP-dependent activase involved in RuBisCo regulation &...	0.08	OrthoFinder output from all 47 species
Dcu_g42045	RCA	ATP-dependent activase involved in RuBisCo regulation &...	0.06	OrthoFinder output from all 47 species
Dde_g08345	RCA	ATP-dependent activase involved in RuBisCo regulation &...	0.07	OrthoFinder output from all 47 species
Dde_g18636	RCA	ATP-dependent activase involved in RuBisCo regulation &...	0.07	OrthoFinder output from all 47 species
Ehy_g03611	RCA	ATP-dependent activase involved in RuBisCo regulation &...	0.05	OrthoFinder output from all 47 species
Ehy_g15758	RCA	ATP-dependent activase involved in RuBisCo regulation &...	0.03	OrthoFinder output from all 47 species
GSVIVT01024910001	RCA	Photosynthesis.calvin cycle.ribulose-1,5-bisphosphat...	0.06	OrthoFinder output from all 47 species
GSVIVT01034123001	RCA	Photosynthesis.calvin cycle.ribulose-1,5-bisphosphat...	0.04	OrthoFinder output from all 47 species
Gb_04109	RCA	ATP-dependent activase involved in RuBisCo regulation	0.04	OrthoFinder output from all 47 species
Gb_37968	RCA	ATP-dependent activase involved in RuBisCo regulation	0.09	OrthoFinder output from all 47 species
LOC_Os11g47970.1	RCA, LOC_Os11g47970	ATP-dependent activase involved in RuBisCo regulation	0.03	OrthoFinder output from all 47 species
Len_g17744	RCA	ATP-dependent activase involved in RuBisCo regulation &...	0.1	OrthoFinder output from all 47 species
Len_g24593	RCA	ATP-dependent activase involved in RuBisCo regulation &...	0.09	OrthoFinder output from all 47 species
Lfl_g05580	RCA	ATP-dependent activase involved in RuBisCo regulation &...	0.06	OrthoFinder output from all 47 species
Lfl_g10261	RCA	ATP-dependent activase involved in RuBisCo regulation &...	0.07	OrthoFinder output from all 47 species
MA_10433855g0010	RCA	ATP-dependent activase involved in RuBisCo regulation	0.1	OrthoFinder output from all 47 species
Mp3g03990.1	RCA	ATP-dependent activase involved in RuBisCo regulation	0.06	OrthoFinder output from all 47 species
Msp_g06782	RCA	ATP-dependent activase involved in RuBisCo regulation &...	0.08	OrthoFinder output from all 47 species
Msp_g10333	RCA	ATP-dependent activase involved in RuBisCo regulation &...	0.09	OrthoFinder output from all 47 species
Nbi_g09928	RCA	ATP-dependent activase involved in RuBisCo regulation &...	0.09	OrthoFinder output from all 47 species
Nbi_g20650	RCA	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Nbi_g25439	RCA	ATP-dependent activase involved in RuBisCo regulation &...	0.05	OrthoFinder output from all 47 species
Pir_g08208	RCA	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Pir_g23735	RCA	ATP-dependent activase involved in RuBisCo regulation &...	0.06	OrthoFinder output from all 47 species
Pir_g41355	RCA	ATP-dependent activase involved in RuBisCo regulation &...	0.04	OrthoFinder output from all 47 species
Pir_g66480	RCA	ATP-dependent activase involved in RuBisCo regulation &...	0.02	OrthoFinder output from all 47 species
Pnu_g24705	RCA	ATP-dependent activase involved in RuBisCo regulation &...	0.06	OrthoFinder output from all 47 species
Ppi_g15847	RCA	ATP-dependent activase involved in RuBisCo regulation &...	0.1	OrthoFinder output from all 47 species
Ppi_g29886	RCA	ATP-dependent activase involved in RuBisCo regulation &...	0.09	OrthoFinder output from all 47 species
Sam_g09791	No alias	ATP-dependent activase involved in RuBisCo regulation &...	0.03	OrthoFinder output from all 47 species
Sam_g28274	No alias	ATP-dependent activase involved in RuBisCo regulation &...	0.07	OrthoFinder output from all 47 species
Sam_g28275	No alias	ATP-dependent activase involved in RuBisCo regulation &...	0.06	OrthoFinder output from all 47 species
Sam_g38765	No alias	ATP-dependent activase involved in RuBisCo regulation &...	0.03	OrthoFinder output from all 47 species
Smo268623	RCA	Photosynthesis.calvin cycle.ribulose-1,5-bisphosphat...	0.09	OrthoFinder output from all 47 species
Solyc10g086580.2.1	RCA, Solyc10g086580	ATP-dependent activase involved in RuBisCo regulation	0.07	OrthoFinder output from all 47 species
Spa_g05667	RCA	ATP-dependent activase involved in RuBisCo regulation &...	0.07	OrthoFinder output from all 47 species
Spa_g05668	RCA	ATP-dependent activase involved in RuBisCo regulation &...	0.08	OrthoFinder output from all 47 species
Spa_g29802	RCA	ATP-dependent activase involved in RuBisCo regulation &...	0.09	OrthoFinder output from all 47 species
Tin_g03996	RCA	ATP-dependent activase involved in RuBisCo regulation &...	0.1	OrthoFinder output from all 47 species
Tin_g07636	RCA	ATP-dependent activase involved in RuBisCo regulation &...	0.08	OrthoFinder output from all 47 species
Zm00001e020928_P001	RCA, Zm00001e020928	ATP-dependent activase involved in RuBisCo regulation	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0016462	pyrophosphatase activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	None	Extended
MF	GO:0016887	ATP hydrolysis activity	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0017111	ribonucleoside triphosphate phosphatase activity	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
BP	GO:0000413	protein peptidyl-prolyl isomerization	IEP	HCCA
MF	GO:0003755	peptidyl-prolyl cis-trans isomerase activity	IEP	HCCA
MF	GO:0004175	endopeptidase activity	IEP	HCCA
MF	GO:0004222	metalloendopeptidase activity	IEP	HCCA
MF	GO:0004672	protein kinase activity	IEP	HCCA
MF	GO:0005215	transporter activity	IEP	HCCA
MF	GO:0005216	monoatomic ion channel activity	IEP	HCCA
MF	GO:0005261	monoatomic cation channel activity	IEP	HCCA
BP	GO:0006163	purine nucleotide metabolic process	IEP	HCCA
BP	GO:0006164	purine nucleotide biosynthetic process	IEP	HCCA
BP	GO:0006468	protein phosphorylation	IEP	HCCA
BP	GO:0006753	nucleoside phosphate metabolic process	IEP	HCCA
BP	GO:0006754	ATP biosynthetic process	IEP	HCCA
BP	GO:0006793	phosphorus metabolic process	IEP	HCCA
BP	GO:0006796	phosphate-containing compound metabolic process	IEP	HCCA
BP	GO:0006807	nitrogen compound metabolic process	IEP	HCCA
BP	GO:0008150	biological_process	IEP	HCCA
BP	GO:0008152	metabolic process	IEP	HCCA
MF	GO:0008237	metallopeptidase activity	IEP	HCCA
BP	GO:0009117	nucleotide metabolic process	IEP	HCCA
BP	GO:0009141	nucleoside triphosphate metabolic process	IEP	HCCA
BP	GO:0009142	nucleoside triphosphate biosynthetic process	IEP	HCCA
BP	GO:0009144	purine nucleoside triphosphate metabolic process	IEP	HCCA
BP	GO:0009145	purine nucleoside triphosphate biosynthetic process	IEP	HCCA
BP	GO:0009150	purine ribonucleotide metabolic process	IEP	HCCA
BP	GO:0009152	purine ribonucleotide biosynthetic process	IEP	HCCA
BP	GO:0009165	nucleotide biosynthetic process	IEP	HCCA
BP	GO:0009199	ribonucleoside triphosphate metabolic process	IEP	HCCA
BP	GO:0009201	ribonucleoside triphosphate biosynthetic process	IEP	HCCA
BP	GO:0009205	purine ribonucleoside triphosphate metabolic process	IEP	HCCA
BP	GO:0009206	purine ribonucleoside triphosphate biosynthetic process	IEP	HCCA
BP	GO:0009259	ribonucleotide metabolic process	IEP	HCCA
BP	GO:0009260	ribonucleotide biosynthetic process	IEP	HCCA
BP	GO:0009987	cellular process	IEP	HCCA
MF	GO:0015078	proton transmembrane transporter activity	IEP	HCCA
MF	GO:0015252	proton channel activity	IEP	HCCA
MF	GO:0015267	channel activity	IEP	HCCA
MF	GO:0015399	primary active transmembrane transporter activity	IEP	HCCA
BP	GO:0015986	proton motive force-driven ATP synthesis	IEP	HCCA
MF	GO:0016301	kinase activity	IEP	HCCA
BP	GO:0016310	phosphorylation	IEP	HCCA
MF	GO:0016701	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen	IEP	HCCA
MF	GO:0016702	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen	IEP	HCCA
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	IEP	HCCA
MF	GO:0016773	phosphotransferase activity, alcohol group as acceptor	IEP	HCCA
MF	GO:0016859	cis-trans isomerase activity	IEP	HCCA
MF	GO:0016874	ligase activity	IEP	HCCA
BP	GO:0018193	peptidyl-amino acid modification	IEP	HCCA
BP	GO:0018208	peptidyl-proline modification	IEP	HCCA
BP	GO:0019538	protein metabolic process	IEP	HCCA
BP	GO:0019693	ribose phosphate metabolic process	IEP	HCCA
MF	GO:0022803	passive transmembrane transporter activity	IEP	HCCA
MF	GO:0022804	active transmembrane transporter activity	IEP	HCCA
MF	GO:0022857	transmembrane transporter activity	IEP	HCCA
MF	GO:0022890	inorganic cation transmembrane transporter activity	IEP	HCCA
CC	GO:0033178	proton-transporting two-sector ATPase complex, catalytic domain	IEP	HCCA
BP	GO:0036211	protein modification process	IEP	HCCA
MF	GO:0042626	ATPase-coupled transmembrane transporter activity	IEP	HCCA
BP	GO:0043170	macromolecule metabolic process	IEP	HCCA
BP	GO:0043412	macromolecule modification	IEP	HCCA
BP	GO:0044238	primary metabolic process	IEP	HCCA
CC	GO:0045261	proton-transporting ATP synthase complex, catalytic core F(1)	IEP	HCCA
BP	GO:0046034	ATP metabolic process	IEP	HCCA
BP	GO:0046390	ribose phosphate biosynthetic process	IEP	HCCA
MF	GO:0046933	proton-transporting ATP synthase activity, rotational mechanism	IEP	HCCA
MF	GO:0051213	dioxygenase activity	IEP	HCCA
BP	GO:0055086	nucleobase-containing small molecule metabolic process	IEP	HCCA
BP	GO:0071704	organic substance metabolic process	IEP	HCCA
BP	GO:0072521	purine-containing compound metabolic process	IEP	HCCA
BP	GO:0072522	purine-containing compound biosynthetic process	IEP	HCCA
BP	GO:0090407	organophosphate biosynthetic process	IEP	HCCA
MF	GO:0140096	catalytic activity, acting on a protein	IEP	HCCA
MF	GO:0140359	ABC-type transporter activity	IEP	HCCA
BP	GO:1901137	carbohydrate derivative biosynthetic process	IEP	HCCA
BP	GO:1901293	nucleoside phosphate biosynthetic process	IEP	HCCA
BP	GO:1901564	organonitrogen compound metabolic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR003959	ATPase_AAA_core	160	302

External Links

No external refs found!

Ore_g04065 (RCA)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation