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Aliases : EMB2758
Description : ssDNA-binding protein *(OSB) & original description: none
Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00008p00241920 | No alias | Pentatricopeptide repeat-containing protein At4g02750... | 0.02 | OrthoFinder output from all 47 species | |
| AMTR_s00025p00218280 | evm_27.TU.AmTr_v1... | Pentatricopeptide repeat-containing protein At5g16860... | 0.02 | OrthoFinder output from all 47 species | |
| AMTR_s00046p00214930 | CRR22,... | Pentatricopeptide repeat-containing protein At1g11290,... | 0.02 | OrthoFinder output from all 47 species | |
| AMTR_s00057p00172690 | evm_27.TU.AmTr_v1... | Pentatricopeptide repeat-containing protein At4g37170... | 0.02 | OrthoFinder output from all 47 species | |
| AT3G49142 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.02 | OrthoFinder output from all 47 species | |
| AT4G21300 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | OrthoFinder output from all 47 species | |
| Adi_g008203 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Adi_g018966 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Adi_g019220 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Adi_g023309 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Adi_g034172 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Adi_g055247 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Adi_g055707 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Adi_g101179 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Adi_g105593 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ala_g23642 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Als_g06739 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Aob_g22823 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aob_g31582 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aspi01Gene02394.t1 | Aspi01Gene02394 | ssDNA-binding protein *(OSB) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Aspi01Gene08082.t1 | EMB2261, Aspi01Gene08082 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aspi01Gene09935.t1 | CRR21, Aspi01Gene09935 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aspi01Gene31490.t1 | Aspi01Gene31490 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aspi01Gene34884.t1 | Aspi01Gene34884 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aspi01Gene41379.t1 | Aspi01Gene41379 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Azfi_s0005.g009216 | No alias | not classified & original description: CDS=1-2520 | 0.03 | OrthoFinder output from all 47 species | |
| Azfi_s0027.g023504 | No alias | not classified & original description: CDS=132-2867 | 0.03 | OrthoFinder output from all 47 species | |
| Cba_g07727 | VAC1, ECB2, ATECB2 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Cba_g07785 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Cba_g17193 | EMB2758 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Cba_g35114 | CRR2 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Cba_g67460 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Cba_g75350 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ceric.11G015200.1 | Ceric.11G015200 | not classified & original description: pacid=50595684... | 0.02 | OrthoFinder output from all 47 species | |
| Ceric.29G070800.1 | Ceric.29G070800 | not classified & original description: pacid=50625555... | 0.02 | OrthoFinder output from all 47 species | |
| Ceric.39G009800.1 | CRR22, Ceric.39G009800 | not classified & original description: pacid=50582900... | 0.03 | OrthoFinder output from all 47 species | |
| Dac_g03211 | EMB2758 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Dac_g12583 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Dcu_g07044 | CRR22 | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Dcu_g08946 | CRR22 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Dcu_g45849 | CRR22 | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Dde_g03935 | VAC1, ECB2, ATECB2 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Dde_g04877 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Dde_g12171 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Dde_g15388 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Dde_g21326 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Dde_g22123 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Dde_g28699 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Dde_g36372 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ehy_g17807 | CRR22 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ehy_g18216 | CRR22 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ehy_g19916 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| GSVIVT01030836001 | No alias | Putative pentatricopeptide repeat-containing protein... | 0.02 | OrthoFinder output from all 47 species | |
| LOC_Os03g58100.1 | OTP85, LOC_Os03g58100 | RNA editing factor (OTP85) | 0.02 | OrthoFinder output from all 47 species | |
| LOC_Os03g64370.1 | LOC_Os03g64370 | Pentatricopeptide repeat-containing protein At5g52850,... | 0.03 | OrthoFinder output from all 47 species | |
| Len_g17998 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Len_g54965 | CRR22 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Lfl_g12137 | OTP84 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| MA_121512g0010 | No alias | ssDNA-binding protein (OSB) | 0.03 | OrthoFinder output from all 47 species | |
| Msp_g15026 | CRR2 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ore_g02370 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ore_g02979 | PTAC9, OSB2 | cofactor of plastid-encoded RNA polymerase *(TAC9) &... | 0.02 | OrthoFinder output from all 47 species | |
| Ore_g12450 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ore_g22460 | No alias | ssDNA-binding protein *(OSB) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ore_g22640 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ore_g43142 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Pir_g61472 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Pnu_g04494 | CRR22 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Pnu_g26070 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Pnu_g30636 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ppi_g08859 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Sacu_v1.1_s0008.g004087 | No alias | not classified & original description: CDS=796-2982 | 0.04 | OrthoFinder output from all 47 species | |
| Sacu_v1.1_s0020.g008203 | OTP86 | not classified & original description: CDS=1-2439 | 0.03 | OrthoFinder output from all 47 species | |
| Sacu_v1.1_s0072.g016959 | No alias | not classified & original description: CDS=1-1596 | 0.03 | OrthoFinder output from all 47 species | |
| Sacu_v1.1_s0139.g022629 | No alias | not classified & original description: CDS=614-2965 | 0.04 | OrthoFinder output from all 47 species | |
| Sacu_v1.1_s0196.g025491 | No alias | not classified & original description: CDS=1-2298 | 0.03 | OrthoFinder output from all 47 species | |
| Sam_g06304 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Sam_g12246 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Sam_g12399 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Sam_g13764 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Sam_g14278 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Sam_g14281 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Sam_g26655 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Smo101239 | EMB2758 | Pentatricopeptide repeat-containing protein At4g33990... | 0.03 | OrthoFinder output from all 47 species | |
| Smo113974 | No alias | Pentatricopeptide repeat-containing protein At4g13650... | 0.02 | OrthoFinder output from all 47 species | |
| Smo30095 | No alias | Pentatricopeptide repeat-containing protein At3g57430,... | 0.02 | OrthoFinder output from all 47 species | |
| Smo79732 | CRR22 | Pentatricopeptide repeat-containing protein At1g11290,... | 0.02 | OrthoFinder output from all 47 species | |
| Smo81625 | CRR22 | Pentatricopeptide repeat-containing protein At1g11290,... | 0.02 | OrthoFinder output from all 47 species | |
| Smo92008 | No alias | Pentatricopeptide repeat-containing protein At3g09040,... | 0.02 | OrthoFinder output from all 47 species | |
| Smo98955 | CRR22 | Pentatricopeptide repeat-containing protein At2g13600... | 0.02 | OrthoFinder output from all 47 species | |
| Spa_g08239 | EMB2758 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Spa_g27589 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Spa_g27928 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Spa_g53359 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Spa_g53488 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Tin_g17636 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Tin_g26741 | EMB2758 | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Zm00001e028330_P001 | PTAC9, OSB2,... | ssDNA-binding protein (OSB). TAC9 cofactor of... | 0.03 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| CC | GO:0000786 | nucleosome | IEP | HCCA |
| MF | GO:0003674 | molecular_function | IEP | HCCA |
| MF | GO:0003676 | nucleic acid binding | IEP | HCCA |
| MF | GO:0003677 | DNA binding | IEP | HCCA |
| MF | GO:0003697 | single-stranded DNA binding | IEP | HCCA |
| MF | GO:0004427 | inorganic diphosphate phosphatase activity | IEP | HCCA |
| MF | GO:0005215 | transporter activity | IEP | HCCA |
| MF | GO:0005488 | binding | IEP | HCCA |
| CC | GO:0005575 | cellular_component | IEP | HCCA |
| BP | GO:0006325 | chromatin organization | IEP | HCCA |
| BP | GO:0006334 | nucleosome assembly | IEP | HCCA |
| BP | GO:0006338 | chromatin remodeling | IEP | HCCA |
| BP | GO:0006396 | RNA processing | IEP | HCCA |
| BP | GO:0006397 | mRNA processing | IEP | HCCA |
| BP | GO:0006810 | transport | IEP | HCCA |
| BP | GO:0006811 | monoatomic ion transport | IEP | HCCA |
| BP | GO:0006812 | monoatomic cation transport | IEP | HCCA |
| BP | GO:0008150 | biological_process | IEP | HCCA |
| MF | GO:0008324 | monoatomic cation transmembrane transporter activity | IEP | HCCA |
| MF | GO:0009678 | pyrophosphate hydrolysis-driven proton transmembrane transporter activity | IEP | HCCA |
| MF | GO:0015078 | proton transmembrane transporter activity | IEP | HCCA |
| MF | GO:0015318 | inorganic molecular entity transmembrane transporter activity | IEP | HCCA |
| MF | GO:0015399 | primary active transmembrane transporter activity | IEP | HCCA |
| CC | GO:0016020 | membrane | IEP | HCCA |
| BP | GO:0016071 | mRNA metabolic process | IEP | HCCA |
| BP | GO:0022607 | cellular component assembly | IEP | HCCA |
| MF | GO:0022804 | active transmembrane transporter activity | IEP | HCCA |
| MF | GO:0022853 | active monoatomic ion transmembrane transporter activity | IEP | HCCA |
| MF | GO:0022857 | transmembrane transporter activity | IEP | HCCA |
| MF | GO:0022890 | inorganic cation transmembrane transporter activity | IEP | HCCA |
| BP | GO:0031123 | RNA 3'-end processing | IEP | HCCA |
| BP | GO:0031124 | mRNA 3'-end processing | IEP | HCCA |
| CC | GO:0032993 | protein-DNA complex | IEP | HCCA |
| BP | GO:0034220 | monoatomic ion transmembrane transport | IEP | HCCA |
| BP | GO:0034728 | nucleosome organization | IEP | HCCA |
| MF | GO:0035639 | purine ribonucleoside triphosphate binding | IEP | HCCA |
| MF | GO:0042162 | telomeric DNA binding | IEP | HCCA |
| MF | GO:0043047 | single-stranded telomeric DNA binding | IEP | HCCA |
| MF | GO:0043565 | sequence-specific DNA binding | IEP | HCCA |
| BP | GO:0043933 | protein-containing complex organization | IEP | HCCA |
| CC | GO:0044815 | DNA packaging complex | IEP | HCCA |
| BP | GO:0051179 | localization | IEP | HCCA |
| BP | GO:0051234 | establishment of localization | IEP | HCCA |
| BP | GO:0065003 | protein-containing complex assembly | IEP | HCCA |
| BP | GO:0065004 | protein-DNA complex assembly | IEP | HCCA |
| BP | GO:0071824 | protein-DNA complex subunit organization | IEP | HCCA |
| MF | GO:0097159 | organic cyclic compound binding | IEP | HCCA |
| BP | GO:0098655 | monoatomic cation transmembrane transport | IEP | HCCA |
| BP | GO:0098660 | inorganic ion transmembrane transport | IEP | HCCA |
| BP | GO:0098662 | inorganic cation transmembrane transport | IEP | HCCA |
| MF | GO:0098847 | sequence-specific single stranded DNA binding | IEP | HCCA |
| MF | GO:1901363 | heterocyclic compound binding | IEP | HCCA |
| BP | GO:1902600 | proton transmembrane transport | IEP | HCCA |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR002885 | Pentatricopeptide_repeat | 685 | 708 |
| IPR002885 | Pentatricopeptide_repeat | 278 | 300 |
| IPR002885 | Pentatricopeptide_repeat | 484 | 504 |
| IPR002885 | Pentatricopeptide_repeat | 407 | 454 |
| IPR002885 | Pentatricopeptide_repeat | 305 | 351 |
| IPR002885 | Pentatricopeptide_repeat | 202 | 250 |
| IPR002885 | Pentatricopeptide_repeat | 509 | 555 |
| IPR002885 | Pentatricopeptide_repeat | 609 | 657 |
| No external refs found! |