Ppi_g40063

Description : DNA primase and helicase *(TWINKLE) & original description: none

Gene families : OG0002154 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002154_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Ppi_g40063

Target	Alias	Description	ECC score	Gene Family Method
AT1G30680	No alias	toprim domain-containing protein	0.03	OrthoFinder output from all 47 species
Aev_g01337	No alias	DNA primase and helicase *(TWINKLE) & original description: none	0.03	OrthoFinder output from all 47 species
Aob_g08419	No alias	DNA primase and helicase *(TWINKLE) & original description: none	0.02	OrthoFinder output from all 47 species
Aop_g09763	No alias	DNA primase and helicase *(TWINKLE) & original description: none	0.04	OrthoFinder output from all 47 species
Aspi01Gene69210.t1	Aspi01Gene69210	DNA primase and helicase *(TWINKLE) & original description: none	0.03	OrthoFinder output from all 47 species
Cba_g14570	No alias	DNA primase and helicase *(TWINKLE) & original description: none	0.03	OrthoFinder output from all 47 species
Ceric.1Z069600.1	Ceric.1Z069600	DNA primase and helicase *(TWINKLE) & original...	0.03	OrthoFinder output from all 47 species
Dde_g17378	No alias	DNA primase and helicase *(TWINKLE) & original description: none	0.03	OrthoFinder output from all 47 species
GSVIVT01008778001	No alias	Cell cycle.organelle machineries.DNA replication.DNA...	0.03	OrthoFinder output from all 47 species
Lfl_g40449	No alias	DNA primase and helicase *(TWINKLE) & original description: none	0.04	OrthoFinder output from all 47 species
MA_21134g0010	No alias	no hits & (original description: none)	0.03	OrthoFinder output from all 47 species
Mp7g12970.1	No alias	DNA primase and helicase (TWINKLE)	0.02	OrthoFinder output from all 47 species
Msp_g27293	No alias	DNA primase and helicase *(TWINKLE) & original description: none	0.02	OrthoFinder output from all 47 species
Ore_g22672	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Sam_g26420	No alias	DNA primase and helicase *(TWINKLE) & original description: none	0.05	OrthoFinder output from all 47 species
Solyc02g022830.3.1	Solyc02g022830	DNA primase and helicase (TWINKLE)	0.02	OrthoFinder output from all 47 species
Spa_g11494	No alias	DNA primase and helicase *(TWINKLE) & original description: none	0.03	OrthoFinder output from all 47 species
Tin_g46173	No alias	DNA primase and helicase *(TWINKLE) & original description: none	0.03	OrthoFinder output from all 47 species
Zm00001e030349_P002	Zm00001e030349	DNA primase and helicase (TWINKLE)	0.06	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003678	DNA helicase activity	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004386	helicase activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006260	DNA replication	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
MF	GO:0008094	ATP-dependent activity, acting on DNA	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:0140097	catalytic activity, acting on DNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
MF	GO:0140657	ATP-dependent activity	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003689	DNA clamp loader activity	IEP	HCCA
MF	GO:0003916	DNA topoisomerase activity	IEP	HCCA
MF	GO:0004175	endopeptidase activity	IEP	HCCA
MF	GO:0004252	serine-type endopeptidase activity	IEP	HCCA
MF	GO:0004843	cysteine-type deubiquitinase activity	IEP	HCCA
CC	GO:0005663	DNA replication factor C complex	IEP	HCCA
BP	GO:0006265	DNA topological change	IEP	HCCA
BP	GO:0006396	RNA processing	IEP	HCCA
BP	GO:0006399	tRNA metabolic process	IEP	HCCA
BP	GO:0006508	proteolysis	IEP	HCCA
BP	GO:0006996	organelle organization	IEP	HCCA
BP	GO:0008033	tRNA processing	IEP	HCCA
MF	GO:0008233	peptidase activity	IEP	HCCA
MF	GO:0008234	cysteine-type peptidase activity	IEP	HCCA
MF	GO:0008236	serine-type peptidase activity	IEP	HCCA
BP	GO:0016070	RNA metabolic process	IEP	HCCA
BP	GO:0016579	protein deubiquitination	IEP	HCCA
MF	GO:0016787	hydrolase activity	IEP	HCCA
MF	GO:0017171	serine hydrolase activity	IEP	HCCA
BP	GO:0019538	protein metabolic process	IEP	HCCA
MF	GO:0019783	ubiquitin-like protein peptidase activity	IEP	HCCA
BP	GO:0032259	methylation	IEP	HCCA
BP	GO:0034470	ncRNA processing	IEP	HCCA
BP	GO:0034660	ncRNA metabolic process	IEP	HCCA
BP	GO:0036211	protein modification process	IEP	HCCA
BP	GO:0043412	macromolecule modification	IEP	HCCA
BP	GO:0051276	chromosome organization	IEP	HCCA
BP	GO:0070646	protein modification by small protein removal	IEP	HCCA
BP	GO:0070647	protein modification by small protein conjugation or removal	IEP	HCCA
BP	GO:0071103	DNA conformation change	IEP	HCCA
MF	GO:0101005	deubiquitinase activity	IEP	HCCA
MF	GO:0140096	catalytic activity, acting on a protein	IEP	HCCA
MF	GO:0140658	ATP-dependent chromatin remodeler activity	IEP	HCCA
BP	GO:1901564	organonitrogen compound metabolic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR006171	TOPRIM_domain	282	375
IPR007694	DNA_helicase_DnaB-like_C	439	691

External Links

No external refs found!

Ppi_g40063

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation