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  5. Ppi_g09240

Ppi_g09240


Description : pre-mRNA splicing factor *(RBM25) & original description: none


Gene families : OG0002875 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002875_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ppi_g09240

Target Alias Description ECC score Gene Family Method Actions
AT1G60200 No alias splicing factor PWI domain-containing protein / RNA... 0.03 OrthoFinder output from all 47 species
Adi_g041603 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g086383 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g48145 No alias pre-mRNA splicing factor *(RBM25) & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g07363 No alias pre-mRNA splicing factor *(RBM25) & original description: none 0.04 OrthoFinder output from all 47 species
Als_g32156 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g56861 No alias pre-mRNA splicing factor *(RBM25) & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g32231 No alias pre-mRNA splicing factor *(RBM25) & original description: none 0.04 OrthoFinder output from all 47 species
Azfi_s0097.g043893 No alias pre-mRNA splicing factor *(RBM25) & original... 0.04 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001065.13 No alias No description available 0.01 OrthoFinder output from all 47 species
Cre08.g375084 No alias No description available 0.01 OrthoFinder output from all 47 species
Dac_g39951 No alias pre-mRNA splicing factor *(RBM25) & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g20400 No alias pre-mRNA splicing factor *(RBM25) & original description: none 0.07 OrthoFinder output from all 47 species
Dde_g09612 No alias pre-mRNA splicing factor *(RBM25) & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g09989 No alias pre-mRNA splicing factor *(RBM25) & original description: none 0.05 OrthoFinder output from all 47 species
Ehy_g31973 No alias pre-mRNA splicing factor *(RBM25) & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01020233001 No alias RNA processing.RNA splicing.U2-type-intron-specific... 0.05 OrthoFinder output from all 47 species
Len_g09390 No alias pre-mRNA splicing factor *(RBM25) & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g39469 No alias pre-mRNA splicing factor *(RBM25) & original description: none 0.05 OrthoFinder output from all 47 species
Mp4g16880.1 No alias pre-mRNA splicing factor (RBM25) 0.05 OrthoFinder output from all 47 species
Msp_g14073 No alias pre-mRNA splicing factor *(RBM25) & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g11390 No alias pre-mRNA splicing factor *(RBM25) & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g24199 No alias pre-mRNA splicing factor *(RBM25) & original description: none 0.04 OrthoFinder output from all 47 species
Smo440812 No alias RNA processing.RNA splicing.U2-type-intron-specific... 0.03 OrthoFinder output from all 47 species
Spa_g40329 No alias pre-mRNA splicing factor *(RBM25) & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g18982 No alias pre-mRNA splicing factor *(RBM25) & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e022382_P002 Zm00001e022382 pre-mRNA splicing factor (RBM25) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0006397 mRNA processing IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003689 DNA clamp loader activity IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004175 endopeptidase activity IEP HCCA
MF GO:0004197 cysteine-type endopeptidase activity IEP HCCA
MF GO:0004198 calcium-dependent cysteine-type endopeptidase activity IEP HCCA
MF GO:0004843 cysteine-type deubiquitinase activity IEP HCCA
CC GO:0005663 DNA replication factor C complex IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006260 DNA replication IEP HCCA
BP GO:0006476 protein deacetylation IEP HCCA
BP GO:0006508 proteolysis IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
BP GO:0008104 protein localization IEP HCCA
MF GO:0008233 peptidase activity IEP HCCA
MF GO:0008234 cysteine-type peptidase activity IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
BP GO:0015031 protein transport IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
BP GO:0016570 histone modification IEP HCCA
BP GO:0016575 histone deacetylation IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
MF GO:0016747 acyltransferase activity, transferring groups other than amino-acyl groups IEP HCCA
MF GO:0019783 ubiquitin-like protein peptidase activity IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
BP GO:0035601 protein deacylation IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
MF GO:0043167 ion binding IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
BP GO:0071705 nitrogen compound transport IEP HCCA
BP GO:0098732 macromolecule deacylation IEP HCCA
MF GO:0101005 deubiquitinase activity IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140299 small molecule sensor activity IEP HCCA
MF GO:0140612 DNA damage sensor activity IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
MF GO:0140658 ATP-dependent chromatin remodeler activity IEP HCCA
MF GO:0140664 ATP-dependent DNA damage sensor activity IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 363 432
IPR002483 PWI_dom 1025 1088
No external refs found!