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  5. Ppi_g02376

Ppi_g02376 (PSBC)


Aliases : PSBC

Description : component *(PsbC/CP43) of PS-II reaction center complex & original description: none


Gene families : OG0003214 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003214_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ppi_g02376
Cluster HCCA: Cluster_17

Target Alias Description ECC score Gene Family Method Actions
AMTR_s01196p00010070 PSBC,... Photosystem II CP43 reaction center protein OS=Carica papaya 0.03 OrthoFinder output from all 47 species
AMTR_s04036p00005710 evm_27.TU.AmTr_v1... Photosystem II CP43 reaction center protein... 0.03 OrthoFinder output from all 47 species
ATCG00280 PSBC photosystem II reaction center protein C 0.04 OrthoFinder output from all 47 species
Aev_g04878 PSBC component *(PsbC/CP43) of PS-II reaction center complex... 0.05 OrthoFinder output from all 47 species
Als_g01018 PSBC component *(PsbC/CP43) of PS-II reaction center complex... 0.03 OrthoFinder output from all 47 species
Aob_g06735 PSBC component *(PsbC/CP43) of PS-II reaction center complex... 0.03 OrthoFinder output from all 47 species
Cba_g32229 PSBC component *(PsbC/CP43) of PS-II reaction center complex... 0.07 OrthoFinder output from all 47 species
Ceric.02G013100.1 PSBC, Ceric.02G013100 component *(PsbC/CP43) of PS-II reaction center complex... 0.04 OrthoFinder output from all 47 species
Ceric.12G058500.1 PSBC, Ceric.12G058500 not classified & original description: pacid=50601680... 0.04 OrthoFinder output from all 47 species
Ceric.12G087100.1 PSBC, Ceric.12G087100 not classified & original description: pacid=50602384... 0.04 OrthoFinder output from all 47 species
Ceric.24G024100.1 PSBC, Ceric.24G024100 component *(PsbC/CP43) of PS-II reaction center complex... 0.06 OrthoFinder output from all 47 species
Ceric.33G053900.1 PSBC, Ceric.33G053900 not classified & original description: pacid=50607717... 0.03 OrthoFinder output from all 47 species
Ceric.36G045000.1 PSBC, Ceric.36G045000 not classified & original description: pacid=50568984... 0.04 OrthoFinder output from all 47 species
Ceric.38G009700.1 PSBC, Ceric.38G009700 component *(PsbC/CP43) of PS-II reaction center complex... 0.04 OrthoFinder output from all 47 species
Ceric.38G040900.1 PSBC, Ceric.38G040900 not classified & original description: pacid=50580441... 0.03 OrthoFinder output from all 47 species
Dac_g04293 PSBC component *(PsbC/CP43) of PS-II reaction center complex... 0.04 OrthoFinder output from all 47 species
Dcu_g10666 PSBC component *(PsbC/CP43) of PS-II reaction center complex... 0.04 OrthoFinder output from all 47 species
Dde_g30384 PSBC component *(PsbC/CP43) of PS-II reaction center complex... 0.1 OrthoFinder output from all 47 species
GSVIVT01006662001 PSBC Photosystem II CP43 reaction center protein OS=Platanus... 0.02 OrthoFinder output from all 47 species
Gb_06826 PSBC Photosystem II CP43 reaction center protein OS=Cycas... 0.03 OrthoFinder output from all 47 species
Gb_11943 PSBC Photosystem II CP43 reaction center protein... 0.03 OrthoFinder output from all 47 species
Gb_19153 PSBC Photosystem II CP43 reaction center protein... 0.03 OrthoFinder output from all 47 species
Gb_19166 PSBC Photosystem II CP43 reaction center protein... 0.04 OrthoFinder output from all 47 species
Gb_22672 PSBC Photosystem II CP43 reaction center protein... 0.03 OrthoFinder output from all 47 species
LOC_Os02g24632.1 PSBC, LOC_Os02g24632 component PsbC/CP43 of PS-II reaction center complex 0.06 OrthoFinder output from all 47 species
LOC_Os04g16874.1 PSBC, LOC_Os04g16874 component PsbC/CP43 of PS-II reaction center complex 0.05 OrthoFinder output from all 47 species
LOC_Os10g21212.1 PSBC, LOC_Os10g21212 component PsbC/CP43 of PS-II reaction center complex 0.06 OrthoFinder output from all 47 species
Len_g16437 PSBC component *(PsbC/CP43) of PS-II reaction center complex... 0.07 OrthoFinder output from all 47 species
Lfl_g10242 PSBC component *(PsbC/CP43) of PS-II reaction center complex... 0.07 OrthoFinder output from all 47 species
Msp_g00655 PSBC component *(PsbC/CP43) of PS-II reaction center complex... 0.05 OrthoFinder output from all 47 species
Nbi_g01251 PSBC component *(PsbC/CP43) of PS-II reaction center complex... 0.04 OrthoFinder output from all 47 species
Ore_g02105 PSBC component *(PsbC/CP43) of PS-II reaction center complex... 0.05 OrthoFinder output from all 47 species
Pir_g10941 PSBC component *(PsbC/CP43) of PS-II reaction center complex... 0.05 OrthoFinder output from all 47 species
Sacu_v1.1_s0004.g002255 PSBC not classified & original description: CDS=1-627 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0010.g004817 PSBC not classified & original description: CDS=1-717 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0015.g006637 PSBC not classified & original description: CDS=1-525 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0015.g006638 PSBC not classified & original description: CDS=1-420 0.03 OrthoFinder output from all 47 species
Sam_g14692 No alias component *(PsbC/CP43) of PS-II reaction center complex... 0.07 OrthoFinder output from all 47 species
Smo137689 PSBC Photosynthesis.photophosphorylation.photosystem II.PS-II... 0.07 OrthoFinder output from all 47 species
Solyc00g230070.1.1 PSBC, Solyc00g230070 Photosystem II CP43 reaction center protein OS=Lepidium... 0.03 OrthoFinder output from all 47 species
Solyc00g500054.1.1 PSBC, Solyc00g500054 component PsbD/D2 of PS-II reaction center complex.... 0.05 OrthoFinder output from all 47 species
Solyc00g500136.1.1 PSBC, Solyc00g500136 component PsbD/D2 of PS-II reaction center complex.... 0.05 OrthoFinder output from all 47 species
Solyc00g500206.1.1 PSBC, Solyc00g500206 component PsbD/D2 of PS-II reaction center complex.... 0.05 OrthoFinder output from all 47 species
Solyc07g009000.1.1 PSBC, Solyc07g009000 Photosystem II CP43 reaction center protein OS=Coffea... 0.04 OrthoFinder output from all 47 species
Solyc09g016930.1.1 PSBC, Solyc09g016930 Photosystem II CP43 reaction center protein OS=Coffea... 0.03 OrthoFinder output from all 47 species
Solyc12g027550.2.1 PSBC, Solyc12g027550 Photosystem II CP43 reaction center protein OS=Nicotiana... 0.04 OrthoFinder output from all 47 species
Tin_g01229 PSBC component *(PsbC/CP43) of PS-II reaction center complex... 0.04 OrthoFinder output from all 47 species
Zm00001e042042_P001 PSBC, Zm00001e042042 Photosystem II CP43 reaction center protein OS=Sorghum... 0.04 OrthoFinder output from all 47 species
Zm00001e042157_P001 PSBC, Zm00001e042157 Photosystem II CP43 reaction center protein OS=Sorghum... 0.03 OrthoFinder output from all 47 species
Zm00001e042269_P001 PSBC, Zm00001e042269 Photosystem II CP43 reaction center protein OS=Sorghum... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0009521 photosystem IEA Interproscan
BP GO:0009767 photosynthetic electron transport chain IEA Interproscan
CC GO:0016020 membrane IEA Interproscan
MF GO:0016168 chlorophyll binding IEA Interproscan
BP GO:0019684 photosynthesis, light reaction IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000287 magnesium ion binding IEP HCCA
MF GO:0005215 transporter activity IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006163 purine nucleotide metabolic process IEP HCCA
BP GO:0006164 purine nucleotide biosynthetic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006753 nucleoside phosphate metabolic process IEP HCCA
BP GO:0006754 ATP biosynthetic process IEP HCCA
BP GO:0006793 phosphorus metabolic process IEP HCCA
BP GO:0006796 phosphate-containing compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0006811 monoatomic ion transport IEP HCCA
BP GO:0006812 monoatomic cation transport IEP HCCA
MF GO:0008324 monoatomic cation transmembrane transporter activity IEP HCCA
MF GO:0009055 electron transfer activity IEP HCCA
BP GO:0009117 nucleotide metabolic process IEP HCCA
BP GO:0009141 nucleoside triphosphate metabolic process IEP HCCA
BP GO:0009142 nucleoside triphosphate biosynthetic process IEP HCCA
BP GO:0009144 purine nucleoside triphosphate metabolic process IEP HCCA
BP GO:0009145 purine nucleoside triphosphate biosynthetic process IEP HCCA
BP GO:0009150 purine ribonucleotide metabolic process IEP HCCA
BP GO:0009152 purine ribonucleotide biosynthetic process IEP HCCA
BP GO:0009165 nucleotide biosynthetic process IEP HCCA
BP GO:0009199 ribonucleoside triphosphate metabolic process IEP HCCA
BP GO:0009201 ribonucleoside triphosphate biosynthetic process IEP HCCA
BP GO:0009205 purine ribonucleoside triphosphate metabolic process IEP HCCA
BP GO:0009206 purine ribonucleoside triphosphate biosynthetic process IEP HCCA
BP GO:0009259 ribonucleotide metabolic process IEP HCCA
BP GO:0009260 ribonucleotide biosynthetic process IEP HCCA
BP GO:0009772 photosynthetic electron transport in photosystem II IEP HCCA
MF GO:0015075 monoatomic ion transmembrane transporter activity IEP HCCA
MF GO:0015078 proton transmembrane transporter activity IEP HCCA
MF GO:0015318 inorganic molecular entity transmembrane transporter activity IEP HCCA
BP GO:0015979 photosynthesis IEP HCCA
BP GO:0015986 proton motive force-driven ATP synthesis IEP HCCA
MF GO:0016491 oxidoreductase activity IEP HCCA
MF GO:0016831 carboxy-lyase activity IEP HCCA
MF GO:0016984 ribulose-bisphosphate carboxylase activity IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
BP GO:0019637 organophosphate metabolic process IEP HCCA
BP GO:0019693 ribose phosphate metabolic process IEP HCCA
MF GO:0022857 transmembrane transporter activity IEP HCCA
MF GO:0022890 inorganic cation transmembrane transporter activity IEP HCCA
CC GO:0033177 proton-transporting two-sector ATPase complex, proton-transporting domain IEP HCCA
BP GO:0034220 monoatomic ion transmembrane transport IEP HCCA
CC GO:0034357 photosynthetic membrane IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
CC GO:0042651 thylakoid membrane IEP HCCA
BP GO:0044281 small molecule metabolic process IEP HCCA
MF GO:0045156 electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity IEP HCCA
CC GO:0045263 proton-transporting ATP synthase complex, coupling factor F(o) IEP HCCA
BP GO:0046034 ATP metabolic process IEP HCCA
BP GO:0046390 ribose phosphate biosynthetic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
MF GO:0051536 iron-sulfur cluster binding IEP HCCA
MF GO:0051540 metal cluster binding IEP HCCA
BP GO:0055085 transmembrane transport IEP HCCA
BP GO:0055086 nucleobase-containing small molecule metabolic process IEP HCCA
BP GO:0072521 purine-containing compound metabolic process IEP HCCA
BP GO:0072522 purine-containing compound biosynthetic process IEP HCCA
BP GO:0090407 organophosphate biosynthetic process IEP HCCA
BP GO:0098655 monoatomic cation transmembrane transport IEP HCCA
BP GO:0098660 inorganic ion transmembrane transport IEP HCCA
BP GO:0098662 inorganic cation transmembrane transport IEP HCCA
BP GO:1901135 carbohydrate derivative metabolic process IEP HCCA
BP GO:1901137 carbohydrate derivative biosynthetic process IEP HCCA
BP GO:1901293 nucleoside phosphate biosynthetic process IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
BP GO:1902600 proton transmembrane transport IEP HCCA
InterPro domains Description Start Stop
IPR000932 PS_antenna-like 1 403
No external refs found!