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  5. AMTR_s04606p00004600

AMTR_s04606p00004600 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold04606.1

Description : Polygalacturonase OS=Prunus persica


Gene families : OG0008809 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0008809_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s04606p00004600
Cluster HCCA: Cluster_12

Target Alias Description ECC score Gene Family Method Actions
AT1G05660 No alias Pectin lyase-like superfamily protein 0.03 OrthoFinder output from all 47 species
AT2G43880 No alias Pectin lyase-like superfamily protein 0.03 OrthoFinder output from all 47 species
AT2G43890 No alias Pectin lyase-like superfamily protein 0.03 OrthoFinder output from all 47 species
LOC_Os01g43490.1 LOC_Os01g43490 Polygalacturonase OS=Prunus persica... 0.02 OrthoFinder output from all 47 species
Solyc02g067630.3.1 Solyc02g067630 Polygalacturonase OS=Prunus persica... 0.02 OrthoFinder output from all 47 species
Solyc02g067640.3.1 Solyc02g067640 Polygalacturonase OS=Prunus persica... 0.03 OrthoFinder output from all 47 species
Solyc08g014540.1.1 Solyc08g014540 Polygalacturonase OS=Prunus persica... 0.04 OrthoFinder output from all 47 species
Solyc12g019120.2.1 Solyc12g019120 Polygalacturonase OS=Prunus persica... 0.04 OrthoFinder output from all 47 species
Solyc12g019180.2.1 Solyc12g019180 Polygalacturonase OS=Prunus persica... 0.03 OrthoFinder output from all 47 species
Solyc12g096730.3.1 Solyc12g096730 Polygalacturonase OS=Prunus persica... 0.01 OrthoFinder output from all 47 species
Solyc12g096740.1.1 Solyc12g096740 Polygalacturonase OS=Prunus persica... 0.03 OrthoFinder output from all 47 species
Solyc12g096750.2.1 Solyc12g096750 Polygalacturonase OS=Prunus persica... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0004650 polygalacturonase activity IEA Interproscan
BP GO:0005975 carbohydrate metabolic process IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
MF GO:0009055 electron transfer activity IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
MF GO:0015035 protein-disulfide reductase activity IEP HCCA
MF GO:0015036 disulfide oxidoreductase activity IEP HCCA
MF GO:0016667 oxidoreductase activity, acting on a sulfur group of donors IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
CC GO:0031227 obsolete intrinsic component of endoplasmic reticulum membrane IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
MF GO:0043565 sequence-specific DNA binding IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
MF GO:0140110 transcription regulator activity IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR000743 Glyco_hydro_28 55 138
No external refs found!