AMTR_s00198p00028070 (GCT,...)

Aliases : GCT, evm_27.TU.AmTr_v1.0_scaffold00198.5

Description : RNA biosynthesis.RNA polymerase II-dependent transcription.MEDIATOR transcription co-activator complex.kinase module.MED13 component

Gene families : OG0005581 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005581_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AMTR_s00198p00028070

Target	Alias	Description	ECC score	Gene Family Method
AT1G55325	GCT	RNA polymerase II transcription mediators	0.11	OrthoFinder output from all 47 species
Ala_g37172	GCT	component *(MED13) of kinase module of MEDIATOR...	0.03	OrthoFinder output from all 47 species
Aop_g09012	GCT	component *(MED13) of kinase module of MEDIATOR...	0.02	OrthoFinder output from all 47 species
Aspi01Gene47629.t1	GCT, Aspi01Gene47629	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Azfi_s0015.g014125	GCT	component *(MED13) of kinase module of MEDIATOR...	0.05	OrthoFinder output from all 47 species
Ceric.39G047500.1	GCT, Ceric.39G047500	component *(MED13) of kinase module of MEDIATOR...	0.07	OrthoFinder output from all 47 species
GSVIVT01025465001	GCT	RNA biosynthesis.RNA polymerase II-dependent...	0.04	OrthoFinder output from all 47 species
Gb_30550	GCT	component MED13 of kinase module of MEDIATOR...	0.08	OrthoFinder output from all 47 species
LOC_Os05g37500.1	GCT, LOC_Os05g37500	component MED13 of kinase module of MEDIATOR...	0.06	OrthoFinder output from all 47 species
Len_g28451	GCT	component *(MED13) of kinase module of MEDIATOR...	0.02	OrthoFinder output from all 47 species
Lfl_g29089	GCT	component *(MED13) of kinase module of MEDIATOR...	0.05	OrthoFinder output from all 47 species
MA_10431052g0020	No alias	no hits & (original description: none)	0.02	OrthoFinder output from all 47 species
MA_577306g0010	GCT	no hits & (original description: none)	0.02	OrthoFinder output from all 47 species
MA_84527g0010	GCT	component MED13 of kinase module of MEDIATOR...	0.07	OrthoFinder output from all 47 species
Mp1g01940.1	GCT	component MED13 of kinase module of MEDIATOR...	0.07	OrthoFinder output from all 47 species
Msp_g14816	GCT	component *(MED13) of kinase module of MEDIATOR...	0.05	OrthoFinder output from all 47 species
Nbi_g38836	GCT	component *(MED13) of kinase module of MEDIATOR...	0.02	OrthoFinder output from all 47 species
Ore_g36609	GCT	component *(MED13) of kinase module of MEDIATOR...	0.07	OrthoFinder output from all 47 species
Pnu_g07521	GCT	component *(MED13) of kinase module of MEDIATOR...	0.02	OrthoFinder output from all 47 species
Ppi_g03289	GCT	component *(MED13) of kinase module of MEDIATOR...	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0231.g026430	GCT	component *(MED13) of kinase module of MEDIATOR...	0.03	OrthoFinder output from all 47 species
Smo447924	GCT	RNA biosynthesis.RNA polymerase II-dependent...	0.07	OrthoFinder output from all 47 species
Solyc04g039950.4.1	GCT, Solyc04g039950	component MED13 of kinase module of MEDIATOR...	0.05	OrthoFinder output from all 47 species
Zm00001e036721_P002	GCT, Zm00001e036721	component MED13 of kinase module of MEDIATOR...	0.07	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006355	regulation of DNA-templated transcription	None	Extended
BP	GO:0006357	regulation of transcription by RNA polymerase II	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
CC	GO:0016592	mediator complex	IEA	Interproscan
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
CC	GO:0140513	nuclear protein-containing complex	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000155	phosphorelay sensor kinase activity	IEP	HCCA
MF	GO:0000156	phosphorelay response regulator activity	IEP	HCCA
BP	GO:0000160	phosphorelay signal transduction system	IEP	HCCA
BP	GO:0000184	nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	IEP	HCCA
BP	GO:0000375	RNA splicing, via transesterification reactions	IEP	HCCA
BP	GO:0000377	RNA splicing, via transesterification reactions with bulged adenosine as nucleophile	IEP	HCCA
BP	GO:0000398	mRNA splicing, via spliceosome	IEP	HCCA
BP	GO:0000956	nuclear-transcribed mRNA catabolic process	IEP	HCCA
MF	GO:0003824	catalytic activity	IEP	HCCA
MF	GO:0004673	protein histidine kinase activity	IEP	HCCA
MF	GO:0004842	ubiquitin-protein transferase activity	IEP	HCCA
MF	GO:0005515	protein binding	IEP	HCCA
CC	GO:0005681	spliceosomal complex	IEP	HCCA
BP	GO:0006397	mRNA processing	IEP	HCCA
BP	GO:0006401	RNA catabolic process	IEP	HCCA
BP	GO:0006402	mRNA catabolic process	IEP	HCCA
BP	GO:0006813	potassium ion transport	IEP	HCCA
MF	GO:0008144	obsolete drug binding	IEP	HCCA
BP	GO:0008380	RNA splicing	IEP	HCCA
BP	GO:0009892	negative regulation of metabolic process	IEP	HCCA
BP	GO:0010605	negative regulation of macromolecule metabolic process	IEP	HCCA
BP	GO:0010629	negative regulation of gene expression	IEP	HCCA
MF	GO:0015299	obsolete solute:proton antiporter activity	IEP	HCCA
BP	GO:0016070	RNA metabolic process	IEP	HCCA
BP	GO:0016071	mRNA metabolic process	IEP	HCCA
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	IEP	HCCA
MF	GO:0016773	phosphotransferase activity, alcohol group as acceptor	IEP	HCCA
MF	GO:0016775	phosphotransferase activity, nitrogenous group as acceptor	IEP	HCCA
BP	GO:0019439	aromatic compound catabolic process	IEP	HCCA
MF	GO:0019787	ubiquitin-like protein transferase activity	IEP	HCCA
BP	GO:0034655	nucleobase-containing compound catabolic process	IEP	HCCA
BP	GO:0044270	cellular nitrogen compound catabolic process	IEP	HCCA
BP	GO:0046700	heterocycle catabolic process	IEP	HCCA
BP	GO:0048519	negative regulation of biological process	IEP	HCCA
MF	GO:0051536	iron-sulfur cluster binding	IEP	HCCA
MF	GO:0051540	metal cluster binding	IEP	HCCA
MF	GO:0060089	molecular transducer activity	IEP	HCCA
MF	GO:0140299	small molecule sensor activity	IEP	HCCA
BP	GO:1901361	organic cyclic compound catabolic process	IEP	HCCA
CC	GO:1990904	ribonucleoprotein complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR009401	Med13_C	1564	1663

External Links

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AMTR_s00198p00028070 (GCT,...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation