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  5. AMTR_s00148p00090060

AMTR_s00148p00090060 (MOM1, MOM,...)


Aliases : MOM1, MOM, evm_27.TU.AmTr_v1.0_scaffold00148.61

Description : Helicase protein MOM1 OS=Arabidopsis thaliana


Gene families : OG0004810 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004810_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00148p00090060

Target Alias Description ECC score Gene Family Method Actions
AT1G08060 MOM1, MOM ATP-dependent helicase family protein 0.1 OrthoFinder output from all 47 species
Adi_g086251 PKL, GYM, CHR6,... DNA helicase *(MOM1) & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g25806 PKR1, CHR4 DNA helicase *(MOM1) & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g02731 CHR5 DNA helicase *(MOM1) & original description: none 0.12 OrthoFinder output from all 47 species
Als_g33419 PKR1, CHR4 DNA helicase *(MOM1) & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g06387 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g59347 PKR1, CHR4 DNA helicase *(MOM1) & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.07G083100.1 PKL, GYM, CHR6,... DNA helicase *(MOM1) & original description:... 0.07 OrthoFinder output from all 47 species
Dac_g20551 PKR1, CHR4 DNA helicase *(MOM1) & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g15932 PKR1, CHR4 DNA helicase *(MOM1) & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g10011 PKR1, CHR4 DNA helicase *(MOM1) & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g15408 PKL, GYM, CHR6,... DNA helicase *(MOM1) & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g23969 PKL, GYM, CHR6,... DNA helicase *(MOM1) & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g25172 PKL, GYM, CHR6,... DNA helicase *(MOM1) & original description: none 0.05 OrthoFinder output from all 47 species
GSVIVT01025216001 MOM1, MOM Helicase protein MOM1 OS=Arabidopsis thaliana 0.09 OrthoFinder output from all 47 species
Gb_01673 PKR1, CHR4 Protein CHROMATIN REMODELING 4 OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
LOC_Os02g02050.1 MOM1, MOM, LOC_Os02g02050 Helicase protein MOM1 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
LOC_Os06g01320.1 MOM1, MOM, LOC_Os06g01320 Helicase protein MOM1 OS=Arabidopsis thaliana... 0.07 OrthoFinder output from all 47 species
Len_g57128 MOM1, MOM DNA helicase *(MOM1) & original description: none 0.06 OrthoFinder output from all 47 species
Lfl_g07857 PKR1, CHR4 DNA helicase *(MOM1) & original description: none 0.08 OrthoFinder output from all 47 species
MA_162474g0010 PKR1, CHR4 Helicase protein MOM1 OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
MA_9572741g0010 ATMBD9, MBD9 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Msp_g13654 PKR1, CHR4 DNA helicase *(MOM1) & original description: none 0.06 OrthoFinder output from all 47 species
Nbi_g10244 CHR5 DNA helicase *(MOM1) & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g25097 PKR1, CHR4 DNA helicase *(MOM1) & original description: none 0.06 OrthoFinder output from all 47 species
Ppi_g58376 MOM1, MOM DNA helicase *(MOM1) & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0063.g015657 PKL, GYM, CHR6,... programmed cell death metacaspase-like regulator *(MCP1)... 0.03 OrthoFinder output from all 47 species
Sam_g27616 No alias DNA helicase *(MOM1) & original description: none 0.03 OrthoFinder output from all 47 species
Smo440558 PKL, GYM, CHR6,... Protein CHROMATIN REMODELING 4 OS=Arabidopsis thaliana 0.05 OrthoFinder output from all 47 species
Solyc06g010240.3.1 MOM1, MOM, Solyc06g010240 Helicase protein MOM1 OS=Arabidopsis thaliana... 0.12 OrthoFinder output from all 47 species
Spa_g07008 PKR1, CHR4 DNA helicase *(MOM1) & original description: none 0.05 OrthoFinder output from all 47 species
Zm00001e036737_P001 MOM1, MOM, Zm00001e036737 Helicase protein MOM1 OS=Arabidopsis thaliana... 0.08 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0004832 valine-tRNA ligase activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
MF GO:0005543 phospholipid binding IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005634 nucleus IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006438 valyl-tRNA aminoacylation IEP HCCA
BP GO:0006479 protein methylation IEP HCCA
MF GO:0008134 transcription factor binding IEP HCCA
MF GO:0008170 N-methyltransferase activity IEP HCCA
BP GO:0008213 protein alkylation IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
MF GO:0008276 protein methyltransferase activity IEP HCCA
MF GO:0008289 lipid binding IEP HCCA
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP HCCA
BP GO:0009891 positive regulation of biosynthetic process IEP HCCA
BP GO:0009893 positive regulation of metabolic process IEP HCCA
BP GO:0010557 positive regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0010604 positive regulation of macromolecule metabolic process IEP HCCA
MF GO:0016278 lysine N-methyltransferase activity IEP HCCA
MF GO:0016279 protein-lysine N-methyltransferase activity IEP HCCA
BP GO:0016570 histone modification IEP HCCA
BP GO:0016571 histone methylation IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
MF GO:0017025 TBP-class protein binding IEP HCCA
BP GO:0018022 peptidyl-lysine methylation IEP HCCA
MF GO:0018024 histone lysine N-methyltransferase activity IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018205 peptidyl-lysine modification IEP HCCA
BP GO:0031325 positive regulation of cellular metabolic process IEP HCCA
BP GO:0031328 positive regulation of cellular biosynthetic process IEP HCCA
BP GO:0032259 methylation IEP HCCA
BP GO:0034968 histone lysine methylation IEP HCCA
MF GO:0042054 histone methyltransferase activity IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0043414 macromolecule methylation IEP HCCA
BP GO:0045893 positive regulation of DNA-templated transcription IEP HCCA
BP GO:0045935 positive regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0048518 positive regulation of biological process IEP HCCA
BP GO:0048522 positive regulation of cellular process IEP HCCA
BP GO:0051173 positive regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051254 positive regulation of RNA metabolic process IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
MF GO:0140296 general transcription initiation factor binding IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
BP GO:1902680 positive regulation of RNA biosynthetic process IEP HCCA
BP GO:1903508 positive regulation of nucleic acid-templated transcription IEP HCCA
InterPro domains Description Start Stop
IPR000330 SNF2_N 878 1117
IPR023780 Chromo_domain 679 724
No external refs found!