AMTR_s00148p00033940 (PHB-1D, ATHB-14, PHB,...)

Aliases : PHB-1D, ATHB-14, PHB, ATHB14, evm_27.TU.AmTr_v1.0_scaffold00148.15

Description : RNA biosynthesis.transcriptional activation.HB (Homeobox) superfamily.HD-ZIP III transcription factor

Gene families : OG0000446 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000446_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AMTR_s00148p00033940
Cluster	HCCA: Cluster_49

Target	Alias	Description	ECC score	Gene Family Method
AT4G32880	HB-8, ATHB8, ATHB-8	homeobox gene 8	0.06	OrthoFinder output from all 47 species
AT5G60690	IFL1, IFL, REV	Homeobox-leucine zipper family protein / lipid-binding...	0.04	OrthoFinder output from all 47 species
Adi_g088231	ICU4, ATHB15,...	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Aev_g11869	ICU4, ATHB15,...	HD-ZIP III-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Aev_g35271	ICU4, ATHB15,...	HD-ZIP III-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Aev_g36023	PHB-1D, ATHB-14,...	transcriptional co-regulator *(ZPR) & original description: none	0.03	OrthoFinder output from all 47 species
Aev_g37323	ICU4, ATHB15,...	HD-ZIP III-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Ala_g04492	ICU4, ATHB15,...	transcriptional co-regulator *(ZPR) & original description: none	0.04	OrthoFinder output from all 47 species
Ala_g07482	ICU4, ATHB15,...	HD-ZIP III-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Ala_g12371	ICU4, ATHB15,...	HD-ZIP III-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Als_g06579	ICU4, ATHB15,...	transcriptional co-regulator *(ZPR) & original description: none	0.04	OrthoFinder output from all 47 species
Als_g09861	ICU4, ATHB15,...	HD-ZIP III-type transcription factor & original description: none	0.05	OrthoFinder output from all 47 species
Als_g17712	ICU4, ATHB15,...	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Als_g33686	PHB-1D, ATHB-14,...	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Als_g46485	ICU4, ATHB15,...	HD-ZIP III-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Als_g50584	ICU4, ATHB15,...	transcriptional co-regulator *(ZPR) & original description: none	0.03	OrthoFinder output from all 47 species
Aob_g20866	PHB-1D, ATHB-14,...	HD-ZIP III-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Aob_g22190	ICU4, ATHB15,...	HD-ZIP III-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Aob_g26987	ICU4, ATHB15,...	HD-ZIP III-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Aop_g05567	ICU4, ATHB15,...	transcriptional co-regulator *(ZPR) & original description: none	0.02	OrthoFinder output from all 47 species
Aop_g06100	ICU4, ATHB15,...	HD-ZIP III-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Aop_g07101	PHB-1D, ATHB-14,...	HD-ZIP III-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Aop_g37722	ICU4, ATHB15,...	HD-ZIP III-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene14282.t1	ICU4, ATHB15,...	transcriptional co-regulator *(ZPR) & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene47508.t1	ICU4, ATHB15,...	HD-ZIP III-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene61236.t1	ICU4, ATHB15,...	HD-ZIP III-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Azfi_s0121.g046826	ICU4, ATHB15,...	HD-ZIP III-type transcription factor & original...	0.01	OrthoFinder output from all 47 species
Azfi_s0292.g063366	PHB-1D, ATHB-14,...	not classified & original description: CDS=845-1303	0.03	OrthoFinder output from all 47 species
Cba_g22007	HB-8, ATHB8, ATHB-8	transcriptional co-regulator *(ZPR) & original description: none	0.02	OrthoFinder output from all 47 species
Cba_g22860	PHB-1D, ATHB-14,...	HD-ZIP III-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Cba_g23262	ICU4, ATHB15,...	HD-ZIP III-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Cba_g43873	ICU4, ATHB15,...	HD-ZIP III-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Cba_g60655	ICU4, ATHB15,...	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ceric.07G076100.1	ICU4, ATHB15,...	HD-ZIP III-type transcription factor & original...	0.02	OrthoFinder output from all 47 species
Ceric.17G020900.1	ICU4, ATHB15,...	HD-ZIP III-type transcription factor & original...	0.08	OrthoFinder output from all 47 species
Ceric.18G068400.1	ICU4, ATHB15,...	HD-ZIP III-type transcription factor & original...	0.06	OrthoFinder output from all 47 species
Ceric.23G045900.1	ICU4, ATHB15,...	transcriptional co-regulator *(ZPR) & original...	0.03	OrthoFinder output from all 47 species
Dac_g39175	PHB-1D, ATHB-14,...	HD-ZIP III-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Ehy_g07882	ICU4, ATHB15,...	HD-ZIP III-type transcription factor & original description: none	0.05	OrthoFinder output from all 47 species
Ehy_g10870	ICU4, ATHB15,...	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Ehy_g12681	ICU4, ATHB15,...	HD-ZIP III-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Ehy_g27410	PHB-1D, ATHB-14,...	HD-ZIP III-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
GSVIVT01017010001	ICU4, ATHB15,...	RNA biosynthesis.transcriptional activation.HB...	0.04	OrthoFinder output from all 47 species
GSVIVT01025193001	IFL1, IFL, REV	RNA biosynthesis.transcriptional activation.HB...	0.05	OrthoFinder output from all 47 species
GSVIVT01035612001	ICU4, ATHB15,...	RNA biosynthesis.transcriptional activation.HB...	0.03	OrthoFinder output from all 47 species
Gb_02083	ICU4, ATHB15,...	transcription factor (HD-ZIP III)	0.03	OrthoFinder output from all 47 species
LOC_Os03g01890.1	IFL1, IFL, REV,...	transcription factor (HD-ZIP III)	0.08	OrthoFinder output from all 47 species
LOC_Os03g43930.1	PHB-1D, ATHB-14,...	transcription factor (HD-ZIP III)	0.04	OrthoFinder output from all 47 species
LOC_Os12g41860.1	PHB-1D, ATHB-14,...	transcription factor (HD-ZIP III)	0.06	OrthoFinder output from all 47 species
Len_g10271	HB-8, ATHB8, ATHB-8	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Len_g19005	ICU4, ATHB15,...	HD-ZIP III-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Len_g50048	ICU4, ATHB15,...	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Lfl_g26487	ICU4, ATHB15,...	HD-ZIP III-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
MA_41083g0010	PHV, ATHB9	pepsin-type protease	0.05	OrthoFinder output from all 47 species
Mp1g24140.1	HB-8, ATHB8, ATHB-8	transcription factor (HD-ZIP III)	0.03	OrthoFinder output from all 47 species
Nbi_g05442	ICU4, ATHB15,...	HD-ZIP III-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Ore_g26455	ICU4, ATHB15,...	HD-ZIP III-type transcription factor & original description: none	0.05	OrthoFinder output from all 47 species
Pnu_g09911	ICU4, ATHB15,...	HD-ZIP III-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Ppi_g02329	ICU4, ATHB15,...	HD-ZIP III-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0015.g006545	No alias	not classified & original description: CDS=1-333	0.04	OrthoFinder output from all 47 species
Sacu_v1.1_s0015.g006550	PHB-1D, ATHB-14,...	transcriptional co-regulator *(ZPR) & original...	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0103.g019961	PHB-1D, ATHB-14,...	component *(uL11) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0123.g021492	HB-8, ATHB8, ATHB-8	not classified & original description: CDS=1-1650	0.03	OrthoFinder output from all 47 species
Sam_g12564	No alias	HD-ZIP III-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Solyc02g024070.3.1	PHB-1D, ATHB-14,...	transcription factor (HD-ZIP III)	0.07	OrthoFinder output from all 47 species
Solyc03g120910.4.1	ICU4, ATHB15,...	transcription factor (HD-ZIP III)	0.06	OrthoFinder output from all 47 species
Solyc08g066500.4.1	ICU4, ATHB15,...	transcription factor (HD-ZIP III)	0.04	OrthoFinder output from all 47 species
Solyc11g069470.3.1	IFL1, IFL, REV,...	transcription factor (HD-ZIP III)	0.07	OrthoFinder output from all 47 species
Solyc12g044410.2.1	ICU4, ATHB15,...	transcription factor (HD-ZIP III)	0.02	OrthoFinder output from all 47 species
Zm00001e000073_P001	IFL1, IFL, REV,...	transcription factor (HD-ZIP III)	0.08	OrthoFinder output from all 47 species
Zm00001e003226_P004	PHB-1D, ATHB-14,...	transcription factor (HD-ZIP III)	0.02	OrthoFinder output from all 47 species
Zm00001e004553_P004	IFL1, IFL, REV,...	transcription factor (HD-ZIP III)	0.09	OrthoFinder output from all 47 species
Zm00001e005034_P001	PHB-1D, ATHB-14,...	transcription factor (HD-ZIP III)	0.1	OrthoFinder output from all 47 species
Zm00001e012408_P002	PHB-1D, ATHB-14,...	transcription factor (HD-ZIP III)	0.05	OrthoFinder output from all 47 species
Zm00001e018118_P002	PHB-1D, ATHB-14,...	transcription factor (HD-ZIP III)	0.11	OrthoFinder output from all 47 species
Zm00001e039093_P002	IFL1, IFL, REV,...	transcription factor (HD-ZIP III)	0.08	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	None	Extended
MF	GO:0003700	DNA-binding transcription factor activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006355	regulation of DNA-templated transcription	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
MF	GO:0043565	sequence-specific DNA binding	IEA	Interproscan
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000151	ubiquitin ligase complex	IEP	HCCA
MF	GO:0004222	metalloendopeptidase activity	IEP	HCCA
MF	GO:0004842	ubiquitin-protein transferase activity	IEP	HCCA
BP	GO:0006813	potassium ion transport	IEP	HCCA
BP	GO:0007155	cell adhesion	IEP	HCCA
MF	GO:0008237	metallopeptidase activity	IEP	HCCA
MF	GO:0008270	zinc ion binding	IEP	HCCA
MF	GO:0015079	potassium ion transmembrane transporter activity	IEP	HCCA
BP	GO:0016567	protein ubiquitination	IEP	HCCA
MF	GO:0019787	ubiquitin-like protein transferase activity	IEP	HCCA
BP	GO:0032446	protein modification by small protein conjugation	IEP	HCCA
BP	GO:0034220	monoatomic ion transmembrane transport	IEP	HCCA
MF	GO:0043167	ion binding	IEP	HCCA
MF	GO:0043169	cation binding	IEP	HCCA
MF	GO:0046872	metal ion binding	IEP	HCCA
MF	GO:0046873	metal ion transmembrane transporter activity	IEP	HCCA
MF	GO:0046914	transition metal ion binding	IEP	HCCA
MF	GO:0051087	chaperone binding	IEP	HCCA
BP	GO:0070647	protein modification by small protein conjugation or removal	IEP	HCCA
BP	GO:0071805	potassium ion transmembrane transport	IEP	HCCA
BP	GO:0098655	monoatomic cation transmembrane transport	IEP	HCCA
BP	GO:0098660	inorganic ion transmembrane transport	IEP	HCCA
BP	GO:0098662	inorganic cation transmembrane transport	IEP	HCCA
MF	GO:0140096	catalytic activity, acting on a protein	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001356	Homeobox_dom	17	75
IPR002913	START_lipid-bd_dom	164	371
IPR013978	MEKHLA	690	837

External Links

No external refs found!

AMTR_s00148p00033940 (PHB-1D, ATHB-14, PHB,...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation