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  5. AMTR_s00142p00060790

AMTR_s00142p00060790 (HCF101,...)


Aliases : HCF101, evm_27.TU.AmTr_v1.0_scaffold00142.34

Description : Coenzyme metabolism.iron-sulfur cluster assembly machineries.plastidial SUF system.transfer phase.HCF101 component


Gene families : OG0004803 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004803_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00142p00060790

Target Alias Description ECC score Gene Family Method Actions
AT3G24430 HCF101 ATP binding 0.11 OrthoFinder output from all 47 species
Adi_g075712 HCF101 scaffold protein HCF101 of plastidial SUF system... 0.05 OrthoFinder output from all 47 species
Aev_g11015 HCF101 scaffold protein HCF101 of plastidial SUF system... 0.06 OrthoFinder output from all 47 species
Ala_g13945 HCF101 scaffold protein HCF101 of plastidial SUF system... 0.03 OrthoFinder output from all 47 species
Als_g18429 HCF101 scaffold protein HCF101 of plastidial SUF system... 0.06 OrthoFinder output from all 47 species
Als_g19035 HCF101 protein involved in PS-I assembly *(HCF101) & original... 0.05 OrthoFinder output from all 47 species
Aob_g14161 HCF101 scaffold protein HCF101 of plastidial SUF system... 0.07 OrthoFinder output from all 47 species
Aop_g25561 HCF101 scaffold protein HCF101 of plastidial SUF system... 0.09 OrthoFinder output from all 47 species
Aspi01Gene57116.t1 HCF101, Aspi01Gene57116 protein involved in PS-I assembly *(HCF101) & original... 0.04 OrthoFinder output from all 47 species
Azfi_s0032.g024765 HCF101 scaffold protein HCF101 of plastidial SUF system... 0.04 OrthoFinder output from all 47 species
Ceric.05G039700.1 HCF101, Ceric.05G039700 scaffold protein HCF101 of plastidial SUF system... 0.1 OrthoFinder output from all 47 species
Cre01.g045902 HCF101 Coenzyme metabolism.iron-sulfur cluster assembly... 0.05 OrthoFinder output from all 47 species
Dac_g13357 HCF101 scaffold protein HCF101 of plastidial SUF system... 0.07 OrthoFinder output from all 47 species
Dcu_g01706 HCF101 scaffold protein HCF101 of plastidial SUF system... 0.07 OrthoFinder output from all 47 species
Dde_g50845 HCF101 scaffold protein HCF101 of plastidial SUF system... 0.04 OrthoFinder output from all 47 species
Ehy_g06869 HCF101 scaffold protein HCF101 of plastidial SUF system... 0.07 OrthoFinder output from all 47 species
GSVIVT01015424001 HCF101 Coenzyme metabolism.iron-sulfur cluster assembly... 0.13 OrthoFinder output from all 47 species
Gb_01824 HCF101 Fe-S cluster assembly factor HCF101, chloroplastic... 0.03 OrthoFinder output from all 47 species
Gb_01825 HCF101 Fe-S cluster assembly factor HCF101, chloroplastic... 0.03 OrthoFinder output from all 47 species
Gb_01826 HCF101 HCF101 protein involved in PS-I assembly 0.07 OrthoFinder output from all 47 species
LOC_Os01g52170.1 HCF101, LOC_Os01g52170 HCF101 protein involved in PS-I assembly. scaffold... 0.06 OrthoFinder output from all 47 species
Len_g45512 HCF101 scaffold protein HCF101 of plastidial SUF system... 0.05 OrthoFinder output from all 47 species
Lfl_g12880 HCF101 scaffold protein HCF101 of plastidial SUF system... 0.07 OrthoFinder output from all 47 species
Mp3g25470.1 HCF101 HCF101 protein involved in PS-I assembly. scaffold... 0.08 OrthoFinder output from all 47 species
Msp_g12150 HCF101 scaffold protein HCF101 of plastidial SUF system... 0.1 OrthoFinder output from all 47 species
Ore_g30871 HCF101 scaffold protein HCF101 of plastidial SUF system... 0.04 OrthoFinder output from all 47 species
Pir_g01014 HCF101 scaffold protein HCF101 of plastidial SUF system... 0.03 OrthoFinder output from all 47 species
Pnu_g25839 HCF101 scaffold protein HCF101 of plastidial SUF system... 0.03 OrthoFinder output from all 47 species
Pp3c19_20070V3.1 HCF101, Pp3c19_20070 ATP binding 0.01 OrthoFinder output from all 47 species
Ppi_g57975 HCF101 scaffold protein HCF101 of plastidial SUF system... 0.08 OrthoFinder output from all 47 species
Sam_g25149 No alias scaffold protein HCF101 of plastidial SUF system... 0.05 OrthoFinder output from all 47 species
Smo91144 HCF101 Coenzyme metabolism.iron-sulfur cluster assembly... 0.07 OrthoFinder output from all 47 species
Solyc12g007010.2.1 HCF101, Solyc12g007010 HCF101 protein involved in PS-I assembly. scaffold... 0.1 OrthoFinder output from all 47 species
Spa_g12261 HCF101 scaffold protein HCF101 of plastidial SUF system... 0.03 OrthoFinder output from all 47 species
Spa_g56238 HCF101 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g02764 HCF101 scaffold protein HCF101 of plastidial SUF system... 0.03 OrthoFinder output from all 47 species
Zm00001e008773_P004 HCF101, Zm00001e008773 HCF101 protein involved in PS-I assembly. scaffold... 0.14 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004222 metalloendopeptidase activity IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0004853 uroporphyrinogen decarboxylase activity IEP HCCA
BP GO:0006066 alcohol metabolic process IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006766 vitamin metabolic process IEP HCCA
BP GO:0006767 water-soluble vitamin metabolic process IEP HCCA
BP GO:0006772 thiamine metabolic process IEP HCCA
BP GO:0006778 porphyrin-containing compound metabolic process IEP HCCA
BP GO:0006779 porphyrin-containing compound biosynthetic process IEP HCCA
BP GO:0006790 sulfur compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0008233 peptidase activity IEP HCCA
MF GO:0008237 metallopeptidase activity IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009110 vitamin biosynthetic process IEP HCCA
BP GO:0009228 thiamine biosynthetic process IEP HCCA
CC GO:0009521 photosystem IEP HCCA
CC GO:0009523 photosystem II IEP HCCA
CC GO:0009654 photosystem II oxygen evolving complex IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0015979 photosynthesis IEP HCCA
MF GO:0016831 carboxy-lyase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
BP GO:0017004 cytochrome complex assembly IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
CC GO:0019898 extrinsic component of membrane IEP HCCA
BP GO:0033013 tetrapyrrole metabolic process IEP HCCA
BP GO:0033014 tetrapyrrole biosynthetic process IEP HCCA
BP GO:0034308 primary alcohol metabolic process IEP HCCA
BP GO:0034309 primary alcohol biosynthetic process IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0042364 water-soluble vitamin biosynthetic process IEP HCCA
BP GO:0042723 thiamine-containing compound metabolic process IEP HCCA
BP GO:0042724 thiamine-containing compound biosynthetic process IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
BP GO:0044272 sulfur compound biosynthetic process IEP HCCA
BP GO:0046165 alcohol biosynthetic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0072527 pyrimidine-containing compound metabolic process IEP HCCA
BP GO:0072528 pyrimidine-containing compound biosynthetic process IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
BP GO:1901615 organic hydroxy compound metabolic process IEP HCCA
BP GO:1901617 organic hydroxy compound biosynthetic process IEP HCCA
CC GO:1990204 oxidoreductase complex IEP HCCA
InterPro domains Description Start Stop
IPR025669 AAA_dom 177 223
IPR019591 Mrp/NBP35_ATP-bd 283 359
IPR002744 MIP18-like 79 152
IPR010376 GBBH-like_N 428 508
No external refs found!