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Aliases : evm_27.TU.AmTr_v1.0_scaffold00136.44
Description : Pentatricopeptide repeat-containing protein At1g10910, chloroplastic OS=Arabidopsis thaliana
Gene families : OG0007769 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0007769_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: AMTR_s00136p00085920 | |
| Cluster | HCCA: Cluster_101 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AT1G10910 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.04 | OrthoFinder output from all 47 species | |
| Adi_g042744 | No alias | RNA editing factor *(PDM2) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Adi_g083413 | No alias | RNA editing factor *(PDM2) & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Aev_g25987 | No alias | RNA editing factor *(PDM2) & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Ala_g25084 | No alias | RNA editing factor *(PDM2) & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Als_g17655 | No alias | RNA editing factor *(PDM2) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Als_g24122 | No alias | RNA editing factor *(PDM2) & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Aop_g00767 | No alias | RNA editing factor *(PDM2) & original description: none | 0.06 | OrthoFinder output from all 47 species | |
| Cba_g02683 | No alias | RNA editing factor *(PDM2) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Cba_g34425 | No alias | RNA editing factor *(PDM2) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ceric.11G067700.1 | Ceric.11G067700 | RNA editing factor *(PDM2) & original description:... | 0.08 | OrthoFinder output from all 47 species | |
| Dac_g16063 | No alias | RNA editing factor *(PDM2) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Dcu_g05612 | No alias | RNA editing factor *(PDM2) & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Dcu_g11807 | No alias | RNA editing factor *(PDM2) & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Dcu_g23213 | No alias | RNA editing factor *(PDM2) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Dde_g13080 | No alias | RNA editing factor *(PDM2) & original description: none | 0.07 | OrthoFinder output from all 47 species | |
| GSVIVT01022920001 | No alias | Pentatricopeptide repeat-containing protein At1g10910,... | 0.11 | OrthoFinder output from all 47 species | |
| LOC_Os01g37870.4 | LOC_Os01g37870 | Pentatricopeptide repeat-containing protein At1g10910,... | 0.1 | OrthoFinder output from all 47 species | |
| Len_g08792 | No alias | RNA editing factor *(PDM2) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Len_g08793 | No alias | RNA editing factor *(PDM2) & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Lfl_g15917 | No alias | RNA editing factor *(PDM2) & original description: none | 0.06 | OrthoFinder output from all 47 species | |
| MA_10436335g0010 | No alias | Pentatricopeptide repeat-containing protein At1g10910,... | 0.02 | OrthoFinder output from all 47 species | |
| MA_316275g0010 | No alias | no hits & (original description: none) | 0.02 | OrthoFinder output from all 47 species | |
| Msp_g10433 | No alias | RNA editing factor *(PDM2) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Nbi_g08999 | No alias | RNA editing factor *(PDM2) & original description: none | 0.06 | OrthoFinder output from all 47 species | |
| Ore_g10589 | No alias | RNA editing factor *(PDM2) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Pir_g60452 | No alias | RNA editing factor *(PDM2) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ppi_g02262 | No alias | RNA editing factor *(PDM2) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Sacu_v1.1_s0141.g022758 | No alias | RNA editing factor *(PDM2) & original description: CDS=659-2260 | 0.04 | OrthoFinder output from all 47 species | |
| Sam_g19491 | No alias | not classified & original description: none | 0.06 | OrthoFinder output from all 47 species | |
| Sam_g36505 | No alias | RNA editing factor *(PDM2) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Solyc11g040260.2.1 | Solyc11g040260 | Pentatricopeptide repeat-containing protein At1g10910,... | 0.06 | OrthoFinder output from all 47 species | |
| Tin_g02850 | No alias | RNA ediTing factor *(PDM2) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Zm00001e020710_P002 | Zm00001e020710 | Pentatricopeptide repeat-containing protein At1g10910,... | 0.09 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0000166 | nucleotide binding | IEP | HCCA |
| MF | GO:0003676 | nucleic acid binding | IEP | HCCA |
| MF | GO:0003723 | RNA binding | IEP | HCCA |
| MF | GO:0003735 | structural constituent of ribosome | IEP | HCCA |
| MF | GO:0004659 | prenyltransferase activity | IEP | HCCA |
| MF | GO:0004812 | aminoacyl-tRNA ligase activity | IEP | HCCA |
| MF | GO:0004828 | serine-tRNA ligase activity | IEP | HCCA |
| MF | GO:0005198 | structural molecule activity | IEP | HCCA |
| MF | GO:0005524 | ATP binding | IEP | HCCA |
| CC | GO:0005737 | cytoplasm | IEP | HCCA |
| CC | GO:0005840 | ribosome | IEP | HCCA |
| BP | GO:0006082 | organic acid metabolic process | IEP | HCCA |
| BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | HCCA |
| BP | GO:0006396 | RNA processing | IEP | HCCA |
| BP | GO:0006399 | tRNA metabolic process | IEP | HCCA |
| BP | GO:0006412 | translation | IEP | HCCA |
| BP | GO:0006418 | tRNA aminoacylation for protein translation | IEP | HCCA |
| BP | GO:0006434 | seryl-tRNA aminoacylation | IEP | HCCA |
| BP | GO:0006518 | peptide metabolic process | IEP | HCCA |
| BP | GO:0006520 | amino acid metabolic process | IEP | HCCA |
| BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | HCCA |
| BP | GO:0006807 | nitrogen compound metabolic process | IEP | HCCA |
| BP | GO:0008033 | tRNA processing | IEP | HCCA |
| BP | GO:0009059 | macromolecule biosynthetic process | IEP | HCCA |
| BP | GO:0009987 | cellular process | IEP | HCCA |
| BP | GO:0016070 | RNA metabolic process | IEP | HCCA |
| MF | GO:0016765 | transferase activity, transferring alkyl or aryl (other than methyl) groups | IEP | HCCA |
| MF | GO:0016874 | ligase activity | IEP | HCCA |
| MF | GO:0016875 | ligase activity, forming carbon-oxygen bonds | IEP | HCCA |
| BP | GO:0019752 | carboxylic acid metabolic process | IEP | HCCA |
| MF | GO:0030554 | adenyl nucleotide binding | IEP | HCCA |
| MF | GO:0032559 | adenyl ribonucleotide binding | IEP | HCCA |
| BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | HCCA |
| BP | GO:0034645 | cellular macromolecule biosynthetic process | IEP | HCCA |
| BP | GO:0034660 | ncRNA metabolic process | IEP | HCCA |
| MF | GO:0035639 | purine ribonucleoside triphosphate binding | IEP | HCCA |
| MF | GO:0036094 | small molecule binding | IEP | HCCA |
| BP | GO:0043038 | amino acid activation | IEP | HCCA |
| BP | GO:0043039 | tRNA aminoacylation | IEP | HCCA |
| BP | GO:0043043 | peptide biosynthetic process | IEP | HCCA |
| MF | GO:0043168 | anion binding | IEP | HCCA |
| BP | GO:0043170 | macromolecule metabolic process | IEP | HCCA |
| CC | GO:0043228 | non-membrane-bounded organelle | IEP | HCCA |
| CC | GO:0043232 | intracellular non-membrane-bounded organelle | IEP | HCCA |
| BP | GO:0043436 | oxoacid metabolic process | IEP | HCCA |
| BP | GO:0043603 | amide metabolic process | IEP | HCCA |
| BP | GO:0043604 | amide biosynthetic process | IEP | HCCA |
| BP | GO:0044237 | cellular metabolic process | IEP | HCCA |
| BP | GO:0044238 | primary metabolic process | IEP | HCCA |
| BP | GO:0046483 | heterocycle metabolic process | IEP | HCCA |
| BP | GO:0051258 | protein polymerization | IEP | HCCA |
| BP | GO:0065003 | protein-containing complex assembly | IEP | HCCA |
| BP | GO:0071704 | organic substance metabolic process | IEP | HCCA |
| BP | GO:0090304 | nucleic acid metabolic process | IEP | HCCA |
| MF | GO:0097159 | organic cyclic compound binding | IEP | HCCA |
| MF | GO:0140098 | catalytic activity, acting on RNA | IEP | HCCA |
| MF | GO:0140101 | catalytic activity, acting on a tRNA | IEP | HCCA |
| MF | GO:0140640 | catalytic activity, acting on a nucleic acid | IEP | HCCA |
| MF | GO:1901265 | nucleoside phosphate binding | IEP | HCCA |
| BP | GO:1901360 | organic cyclic compound metabolic process | IEP | HCCA |
| MF | GO:1901363 | heterocyclic compound binding | IEP | HCCA |
| BP | GO:1901564 | organonitrogen compound metabolic process | IEP | HCCA |
| BP | GO:1901566 | organonitrogen compound biosynthetic process | IEP | HCCA |
| No external refs found! |