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  5. AMTR_s00114p00128980

AMTR_s00114p00128980 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00114.59

No description available


Gene families : OG0002186 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002186_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00114p00128980
Cluster HCCA: Cluster_101

Target Alias Description ECC score Gene Family Method Actions
AT3G11560 No alias LETM1-like protein 0.03 OrthoFinder output from all 47 species
Aev_g03407 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g03874 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g21243 No alias MADS/AGL-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Azfi_s0007.g010635 No alias not classified & original description: CDS=25-1191 0.05 OrthoFinder output from all 47 species
Azfi_s0059.g034694 No alias not classified & original description: CDS=1-2949 0.03 OrthoFinder output from all 47 species
Ceric.02G026100.1 Ceric.02G026100 not classified & original description: pacid=50585185... 0.04 OrthoFinder output from all 47 species
Dcu_g01930 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dde_g11060 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ehy_g12944 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01033899001 No alias No description available 0.02 OrthoFinder output from all 47 species
Gb_31732 No alias no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
LOC_Os08g37610.1 LOC_Os08g37610 no hits & (original description: none) 0.08 OrthoFinder output from all 47 species
Len_g24365 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g09198 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
MA_10431582g0010 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
MA_10435533g0010 No alias no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
MA_10436972g0010 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
MA_116156g0010 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Ppi_g55957 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Sam_g40539 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Smo403300 No alias No description available 0.05 OrthoFinder output from all 47 species
Solyc09g010280.3.1 Solyc09g010280 no hits & (original description: none) 0.06 OrthoFinder output from all 47 species
Tin_g09730 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Zm00001e003387_P005 Zm00001e003387 no hits & (original description: none) 0.08 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003743 translation initiation factor activity IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0003916 DNA topoisomerase activity IEP HCCA
MF GO:0004222 metalloendopeptidase activity IEP HCCA
MF GO:0004784 superoxide dismutase activity IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005694 chromosome IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006265 DNA topological change IEP HCCA
BP GO:0006298 mismatch repair IEP HCCA
BP GO:0006413 translational initiation IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006801 superoxide metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0008237 metallopeptidase activity IEP HCCA
BP GO:0009987 cellular process IEP HCCA
MF GO:0016721 oxidoreductase activity, acting on superoxide radicals as acceptor IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP HCCA
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
BP GO:0017038 protein import IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0019205 nucleobase-containing compound kinase activity IEP HCCA
MF GO:0030247 polysaccharide binding IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0030983 mismatched DNA binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0071103 DNA conformation change IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0072593 reactive oxygen species metabolic process IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
MF GO:2001070 starch binding IEP HCCA

No InterPro domains available for this sequence

No external refs found!