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Aliases : evm_27.TU.AmTr_v1.0_scaffold00105.19
Description : Pentatricopeptide repeat-containing protein At1g71060, mitochondrial OS=Arabidopsis thaliana
Gene families : OG0000142 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000142_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00119p00029960 | evm_27.TU.AmTr_v1... | Pentatricopeptide repeat-containing protein At5g15010,... | 0.04 | OrthoFinder output from all 47 species | |
| AMTR_s00142p00073110 | evm_27.TU.AmTr_v1... | Pentatricopeptide repeat-containing protein At1g73400,... | 0.03 | OrthoFinder output from all 47 species | |
| AT1G02420 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.03 | OrthoFinder output from all 47 species | |
| AT1G52640 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.03 | OrthoFinder output from all 47 species | |
| AT1G71060 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.04 | OrthoFinder output from all 47 species | |
| AT1G73400 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.03 | OrthoFinder output from all 47 species | |
| AT3G62470 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.03 | OrthoFinder output from all 47 species | |
| AT5G15010 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.04 | OrthoFinder output from all 47 species | |
| AT5G43820 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.03 | OrthoFinder output from all 47 species | |
| AT5G65820 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.03 | OrthoFinder output from all 47 species | |
| Adi_g088709 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Aev_g03187 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Als_g01092 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Als_g07362 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Als_g15135 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Als_g15680 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Aob_g11133 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Aob_g15608 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Aspi01Gene64236.t1 | Aspi01Gene64236 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Cba_g10252 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ceric.24G045100.1 | Ceric.24G045100 | not classified & original description: pacid=50628969... | 0.03 | OrthoFinder output from all 47 species | |
| Dac_g07022 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Dac_g07047 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Dcu_g03049 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Dcu_g03918 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Dcu_g05532 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Dcu_g32634 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Dcu_g39023 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Dde_g06106 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Dde_g07270 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Dde_g18713 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ehy_g14509 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| GSVIVT01007280001 | No alias | Pentatricopeptide repeat-containing protein At3g49730... | 0.03 | OrthoFinder output from all 47 species | |
| GSVIVT01008815001 | No alias | Pentatricopeptide repeat-containing protein At1g77360,... | 0.02 | OrthoFinder output from all 47 species | |
| GSVIVT01014289001 | No alias | Putative pentatricopeptide repeat-containing protein... | 0.04 | OrthoFinder output from all 47 species | |
| GSVIVT01015982001 | No alias | Pentatricopeptide repeat-containing protein At1g80880,... | 0.02 | OrthoFinder output from all 47 species | |
| GSVIVT01017111001 | No alias | Pentatricopeptide repeat-containing protein At3g16010... | 0.02 | OrthoFinder output from all 47 species | |
| GSVIVT01022794001 | No alias | Pentatricopeptide repeat-containing protein At1g73400,... | 0.03 | OrthoFinder output from all 47 species | |
| GSVIVT01026463001 | No alias | Pentatricopeptide repeat-containing protein At2g13420,... | 0.04 | OrthoFinder output from all 47 species | |
| GSVIVT01027388001 | No alias | Pentatricopeptide repeat-containing protein At1g80550,... | 0.02 | OrthoFinder output from all 47 species | |
| GSVIVT01029740001 | No alias | Pentatricopeptide repeat-containing protein At3g62470,... | 0.05 | OrthoFinder output from all 47 species | |
| Gb_05336 | No alias | Putative pentatricopeptide repeat-containing protein... | 0.03 | OrthoFinder output from all 47 species | |
| Gb_06907 | No alias | Pentatricopeptide repeat-containing protein At1g80550,... | 0.03 | OrthoFinder output from all 47 species | |
| Gb_11871 | No alias | Pentatricopeptide repeat-containing protein At3g49730... | 0.05 | OrthoFinder output from all 47 species | |
| Gb_12874 | No alias | Pentatricopeptide repeat-containing protein At3g61360... | 0.03 | OrthoFinder output from all 47 species | |
| Gb_13617 | No alias | Pentatricopeptide repeat-containing protein At1g77360,... | 0.06 | OrthoFinder output from all 47 species | |
| Gb_19758 | No alias | Putative pentatricopeptide repeat-containing protein... | 0.03 | OrthoFinder output from all 47 species | |
| Gb_20750 | No alias | Pentatricopeptide repeat-containing protein At5g64320,... | 0.03 | OrthoFinder output from all 47 species | |
| Gb_23459 | No alias | Pentatricopeptide repeat-containing protein At1g77360,... | 0.04 | OrthoFinder output from all 47 species | |
| Gb_32987 | No alias | Pentatricopeptide repeat-containing protein At5g18390,... | 0.03 | OrthoFinder output from all 47 species | |
| Gb_41835 | No alias | Pentatricopeptide repeat-containing protein At2g13420,... | 0.04 | OrthoFinder output from all 47 species | |
| LOC_Os01g05860.1 | LOC_Os01g05860 | Putative pentatricopeptide repeat-containing protein... | 0.02 | OrthoFinder output from all 47 species | |
| LOC_Os02g52220.1 | LOC_Os02g52220 | Pentatricopeptide repeat-containing protein At1g73400,... | 0.02 | OrthoFinder output from all 47 species | |
| LOC_Os03g51840.1 | LOC_Os03g51840 | Pentatricopeptide repeat-containing protein At3g49730... | 0.03 | OrthoFinder output from all 47 species | |
| LOC_Os05g28720.1 | LOC_Os05g28720 | Pentatricopeptide repeat-containing protein At3g62470,... | 0.03 | OrthoFinder output from all 47 species | |
| LOC_Os08g28180.1 | LOC_Os08g28180 | Pentatricopeptide repeat-containing protein At2g13420,... | 0.02 | OrthoFinder output from all 47 species | |
| Lfl_g29766 | OTP43 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| MA_10432868g0030 | No alias | Putative pentatricopeptide repeat-containing protein... | 0.04 | OrthoFinder output from all 47 species | |
| MA_10433557g0010 | No alias | Pentatricopeptide repeat-containing protein At2g27800,... | 0.05 | OrthoFinder output from all 47 species | |
| MA_128052g0010 | No alias | Pentatricopeptide repeat-containing protein At3g53700,... | 0.03 | OrthoFinder output from all 47 species | |
| MA_387336g0010 | No alias | Pentatricopeptide repeat-containing protein At3g22670,... | 0.03 | OrthoFinder output from all 47 species | |
| MA_8206159g0010 | No alias | Pentatricopeptide repeat-containing protein At5g15010,... | 0.02 | OrthoFinder output from all 47 species | |
| MA_845827g0010 | No alias | Pentatricopeptide repeat-containing protein At1g06710,... | 0.04 | OrthoFinder output from all 47 species | |
| MA_933431g0010 | No alias | Pentatricopeptide repeat-containing protein At1g20300,... | 0.02 | OrthoFinder output from all 47 species | |
| Msp_g08820 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Ore_g08945 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Sacu_v1.1_s0055.g014467 | No alias | not classified & original description: CDS=1-2058 | 0.03 | OrthoFinder output from all 47 species | |
| Solyc01g006850.1.1 | Solyc01g006850 | Putative pentatricopeptide repeat-containing protein... | 0.03 | OrthoFinder output from all 47 species | |
| Solyc03g116540.1.1 | Solyc03g116540 | Pentatricopeptide repeat-containing protein At1g52640,... | 0.04 | OrthoFinder output from all 47 species | |
| Solyc04g076370.4.1 | Solyc04g076370 | Pentatricopeptide repeat-containing protein At2g27800,... | 0.03 | OrthoFinder output from all 47 species | |
| Solyc04g081950.4.1 | Solyc04g081950 | Pentatricopeptide repeat-containing protein At1g20300,... | 0.03 | OrthoFinder output from all 47 species | |
| Solyc06g083200.3.1 | Solyc06g083200 | Pentatricopeptide repeat-containing protein At3g25210,... | 0.02 | OrthoFinder output from all 47 species | |
| Solyc09g082390.3.1 | Solyc09g082390 | Pentatricopeptide repeat-containing protein At3g22670,... | 0.06 | OrthoFinder output from all 47 species | |
| Solyc11g071670.2.1 | Solyc11g071670 | Putative pentatricopeptide repeat-containing protein... | 0.06 | OrthoFinder output from all 47 species | |
| Tin_g02821 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Tin_g21176 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Zm00001e005446_P003 | Zm00001e005446 | group-II intron mitochondrial splicing factor (MISF68) | 0.02 | OrthoFinder output from all 47 species | |
| Zm00001e013118_P001 | Zm00001e013118 | Pentatricopeptide repeat-containing protein At3g61360... | 0.03 | OrthoFinder output from all 47 species | |
| Zm00001e026896_P001 | Zm00001e026896 | Pentatricopeptide repeat-containing protein At3g62470,... | 0.03 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| BP | GO:0001522 | pseudouridine synthesis | IEP | HCCA |
| MF | GO:0003723 | RNA binding | IEP | HCCA |
| MF | GO:0004222 | metalloendopeptidase activity | IEP | HCCA |
| MF | GO:0004812 | aminoacyl-tRNA ligase activity | IEP | HCCA |
| BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | HCCA |
| BP | GO:0006364 | rRNA processing | IEP | HCCA |
| BP | GO:0006396 | RNA processing | IEP | HCCA |
| BP | GO:0006418 | tRNA aminoacylation for protein translation | IEP | HCCA |
| BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | HCCA |
| MF | GO:0008237 | metallopeptidase activity | IEP | HCCA |
| BP | GO:0009451 | RNA modification | IEP | HCCA |
| BP | GO:0016070 | RNA metabolic process | IEP | HCCA |
| BP | GO:0016072 | rRNA metabolic process | IEP | HCCA |
| BP | GO:0016073 | snRNA metabolic process | IEP | HCCA |
| MF | GO:0016875 | ligase activity, forming carbon-oxygen bonds | IEP | HCCA |
| BP | GO:0022613 | ribonucleoprotein complex biogenesis | IEP | HCCA |
| MF | GO:0030515 | snoRNA binding | IEP | HCCA |
| BP | GO:0031120 | snRNA pseudouridine synthesis | IEP | HCCA |
| BP | GO:0034470 | ncRNA processing | IEP | HCCA |
| BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | HCCA |
| BP | GO:0034660 | ncRNA metabolic process | IEP | HCCA |
| BP | GO:0040031 | snRNA modification | IEP | HCCA |
| BP | GO:0042254 | ribosome biogenesis | IEP | HCCA |
| BP | GO:0043038 | amino acid activation | IEP | HCCA |
| BP | GO:0043039 | tRNA aminoacylation | IEP | HCCA |
| BP | GO:0044085 | cellular component biogenesis | IEP | HCCA |
| BP | GO:0046483 | heterocycle metabolic process | IEP | HCCA |
| BP | GO:0090304 | nucleic acid metabolic process | IEP | HCCA |
| BP | GO:1901360 | organic cyclic compound metabolic process | IEP | HCCA |
| No external refs found! |