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  5. AMTR_s00091p00120960

AMTR_s00091p00120960 (CEN2,...)


Aliases : CEN2, evm_27.TU.AmTr_v1.0_scaffold00091.44

Description : RNA processing.messenger ribonucleoprotein particle (mRNP).mRNP export.TREX-2 mRNP trafficking complex.CEN centrin component


Gene families : OG0001195 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001195_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00091p00120960

Target Alias Description ECC score Gene Family Method Actions
Adi_g012700 CEN2 calcium sensor *(CML) & original description: none 0.07 OrthoFinder output from all 47 species
Aob_g19735 CEN2 calcium sensor *(CML) & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g33333 CEN2 calcium sensor *(CML) & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g38419 CEN2 calcium sensor *(CML) & original description: none 0.04 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001388.4 CEN2 Caltractin OS=Scherffelia dubia 0.02 OrthoFinder output from all 47 species
Dde_g03142 CEN2 calcium sensor *(CML) & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01022137001 CEN2, CEN1, ATCEN2 RNA processing.messenger ribonucleoprotein particle... 0.02 OrthoFinder output from all 47 species
GSVIVT01038234001 CEN2 RNA processing.messenger ribonucleoprotein particle... 0.02 OrthoFinder output from all 47 species
Msp_g25286 CEN2 calcium sensor *(CML) & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g55331 CEN2 calcium sensor *(CML) & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g04269 CEN2 calcium sensor *(CML) & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0073.g017103 CEN2 calcium sensor *(CML) & original description: CDS=208-687 0.02 OrthoFinder output from all 47 species
Tin_g29841 CEN2 calcium sensor *(CML) & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005509 calcium ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0009056 catabolic process IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
BP GO:0019941 modification-dependent protein catabolic process IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043632 modification-dependent macromolecule catabolic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
BP GO:0051603 proteolysis involved in protein catabolic process IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
BP GO:1901575 organic substance catabolic process IEP HCCA
InterPro domains Description Start Stop
IPR011992 EF-hand-dom_pair 127 187
IPR011992 EF-hand-dom_pair 54 114
No external refs found!