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  5. AMTR_s00088p00153240

AMTR_s00088p00153240 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00088.123

Description : Protein translocation.nucleus.nucleocytoplasmic transport.nuclear pore complex (NPC).outer ring.NUP133 scaffold nucleoporin


Gene families : OG0005400 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005400_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00088p00153240

Target Alias Description ECC score Gene Family Method Actions
AT2G05120 No alias Nucleoporin, Nup133/Nup155-like 0.03 OrthoFinder output from all 47 species
Adi_g007776 No alias scaffold nucleoporin of nuclear pore complex *(NUP133) &... 0.03 OrthoFinder output from all 47 species
Aop_g07570 No alias scaffold nucleoporin of nuclear pore complex *(NUP133) &... 0.03 OrthoFinder output from all 47 species
Cba_g01337 No alias scaffold nucleoporin of nuclear pore complex *(NUP133) &... 0.03 OrthoFinder output from all 47 species
Ceric.39G025700.1 Ceric.39G025700 scaffold nucleoporin of nuclear pore complex *(NUP133) &... 0.04 OrthoFinder output from all 47 species
Dac_g31164 No alias scaffold nucleoporin of nuclear pore complex *(NUP133) &... 0.04 OrthoFinder output from all 47 species
Dcu_g14943 No alias scaffold nucleoporin of nuclear pore complex *(NUP133) &... 0.04 OrthoFinder output from all 47 species
Ehy_g06208 No alias scaffold nucleoporin of nuclear pore complex *(NUP133) &... 0.02 OrthoFinder output from all 47 species
GSVIVT01030051001 No alias Protein translocation.nucleus.nucleocytoplasmic... 0.07 OrthoFinder output from all 47 species
Gb_30615 No alias NUP133 scaffold nucleoporin of nuclear pore complex 0.03 OrthoFinder output from all 47 species
LOC_Os03g12450.1 LOC_Os03g12450 NUP133 scaffold nucleoporin of nuclear pore complex 0.04 OrthoFinder output from all 47 species
Len_g19178 No alias scaffold nucleoporin of nuclear pore complex *(NUP133) &... 0.02 OrthoFinder output from all 47 species
Lfl_g25138 No alias scaffold nucleoporin of nuclear pore complex *(NUP133) &... 0.03 OrthoFinder output from all 47 species
Mp1g23960.1 No alias NUP133 scaffold nucleoporin of nuclear pore complex 0.03 OrthoFinder output from all 47 species
Msp_g14850 No alias scaffold nucleoporin of nuclear pore complex *(NUP133) &... 0.04 OrthoFinder output from all 47 species
Ore_g26746 No alias scaffold nucleoporin of nuclear pore complex *(NUP133) &... 0.05 OrthoFinder output from all 47 species
Ppi_g02412 No alias scaffold nucleoporin of nuclear pore complex *(NUP133) &... 0.02 OrthoFinder output from all 47 species
Smo439467 No alias Protein translocation.nucleus.nucleocytoplasmic... 0.02 OrthoFinder output from all 47 species
Zm00001e038670_P001 Zm00001e038670 NUP133 scaffold nucleoporin of nuclear pore complex 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000049 tRNA binding IEP HCCA
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003887 DNA-directed DNA polymerase activity IEP HCCA
MF GO:0003916 DNA topoisomerase activity IEP HCCA
MF GO:0003918 DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity IEP HCCA
MF GO:0003924 GTPase activity IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004527 exonuclease activity IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005694 chromosome IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006260 DNA replication IEP HCCA
BP GO:0006265 DNA topological change IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
MF GO:0008408 3'-5' exonuclease activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0034061 DNA polymerase activity IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0071103 DNA conformation change IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR014908 Nucleoporin_Nup133/Nup155_N 310 525
IPR007187 Nucleoporin_Nup133/Nup155_C 665 1230
No external refs found!