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  5. AMTR_s00060p00130340

AMTR_s00060p00130340 (NUP155,...)


Aliases : NUP155, evm_27.TU.AmTr_v1.0_scaffold00060.71

Description : Protein translocation.nucleus.nucleocytoplasmic transport.nuclear pore complex (NPC).inner ring.NUP155 scaffold nucleoporin


Gene families : OG0004159 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004159_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00060p00130340

Target Alias Description ECC score Gene Family Method Actions
Adi_g057726 NUP155 scaffold nucleoporin of nuclear pore complex *(NUP155) &... 0.03 OrthoFinder output from all 47 species
Adi_g087243 NUP155 scaffold nucleoporin of nuclear pore complex *(NUP155) &... 0.02 OrthoFinder output from all 47 species
Ala_g08015 NUP155 scaffold nucleoporin of nuclear pore complex *(NUP155) &... 0.03 OrthoFinder output from all 47 species
Als_g01209 NUP155 scaffold nucleoporin of nuclear pore complex *(NUP155) &... 0.04 OrthoFinder output from all 47 species
Aob_g18686 NUP155 scaffold nucleoporin of nuclear pore complex *(NUP155) &... 0.02 OrthoFinder output from all 47 species
Aop_g13988 NUP155 scaffold nucleoporin of nuclear pore complex *(NUP155) &... 0.06 OrthoFinder output from all 47 species
Azfi_s0010.g012176 NUP155 scaffold nucleoporin of nuclear pore complex *(NUP155) &... 0.03 OrthoFinder output from all 47 species
Ceric.28G038900.1 NUP155, Ceric.28G038900 scaffold nucleoporin of nuclear pore complex *(NUP155) &... 0.05 OrthoFinder output from all 47 species
Cre09.g394350 NUP155 Protein translocation.nucleus.nucleocytoplasmic... 0.02 OrthoFinder output from all 47 species
Dac_g15658 NUP155 scaffold nucleoporin of nuclear pore complex *(NUP155) &... 0.02 OrthoFinder output from all 47 species
Dde_g13741 NUP155 scaffold nucleoporin of nuclear pore complex *(NUP155) &... 0.02 OrthoFinder output from all 47 species
GSVIVT01011661001 NUP155 Protein translocation.nucleus.nucleocytoplasmic... 0.04 OrthoFinder output from all 47 species
Gb_24664 NUP155 NUP155 scaffold nucleoporin of nuclear pore complex 0.05 OrthoFinder output from all 47 species
LOC_Os06g20090.1 NUP155, LOC_Os06g20090 NUP155 scaffold nucleoporin of nuclear pore complex 0.02 OrthoFinder output from all 47 species
Len_g04846 NUP155 scaffold nucleoporin of nuclear pore complex *(NUP155) &... 0.05 OrthoFinder output from all 47 species
Lfl_g02470 NUP155 scaffold nucleoporin of nuclear pore complex *(NUP155) &... 0.04 OrthoFinder output from all 47 species
Mp6g03580.1 NUP155 NUP155 scaffold nucleoporin of nuclear pore complex 0.04 OrthoFinder output from all 47 species
Ore_g37203 NUP155 scaffold nucleoporin of nuclear pore complex *(NUP155) &... 0.07 OrthoFinder output from all 47 species
Pnu_g19403 NUP155 scaffold nucleoporin of nuclear pore complex *(NUP155) &... 0.03 OrthoFinder output from all 47 species
Sam_g52348 No alias scaffold nucleoporin of nuclear pore complex *(NUP155) &... 0.03 OrthoFinder output from all 47 species
Solyc07g008160.3.1 NUP155, Solyc07g008160 NUP155 scaffold nucleoporin of nuclear pore complex 0.07 OrthoFinder output from all 47 species
Zm00001e000883_P002 NUP155, Zm00001e000883 NUP155 scaffold nucleoporin of nuclear pore complex 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP HCCA
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP HCCA
BP GO:0000398 mRNA splicing, via spliceosome IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003916 DNA topoisomerase activity IEP HCCA
MF GO:0003918 DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
MF GO:0005543 phospholipid binding IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005634 nucleus IEP HCCA
CC GO:0005681 spliceosomal complex IEP HCCA
CC GO:0005694 chromosome IEP HCCA
BP GO:0006265 DNA topological change IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
MF GO:0008289 lipid binding IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
MF GO:0051287 NAD binding IEP HCCA
BP GO:0071103 DNA conformation change IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR014908 Nucleoporin_Nup133/Nup155_N 58 548
IPR007187 Nucleoporin_Nup133/Nup155_C 698 1343
No external refs found!