AMTR_s00059p00193620 (MGO1, TOP1,...)


Aliases : MGO1, TOP1, TOP1ALPHA, evm_27.TU.AmTr_v1.0_scaffold00059.214

Description : Cell cycle.interphase.DNA replication.preinitiation.TOP1 DNA topoisomerase


Gene families : OG0002461 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002461_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00059p00193620

Target Alias Description ECC score Gene Family Method Actions
AT5G55300 MGO1, TOP1, TOP1ALPHA DNA topoisomerase I alpha 0.07 OrthoFinder output from all 47 species
Adi_g087257 TOP1BETA, TOP1 DNA topoisomerase *(TOP1) & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g088243 TOP1BETA, TOP1 DNA topoisomerase *(TOP1) & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g08299 TOP1BETA, TOP1 DNA topoisomerase *(TOP1) & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g13391 TOP1BETA, TOP1 DNA topoisomerase *(TOP1) & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g41324 TOP1BETA, TOP1 DNA topoisomerase *(TOP1) & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g14348 TOP1BETA, TOP1 DNA topoisomerase *(TOP1) & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g26199 TOP1BETA, TOP1 DNA topoisomerase *(TOP1) & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.07G062200.1 TOP1BETA, TOP1,... DNA topoisomerase *(TOP1) & original description:... 0.06 OrthoFinder output from all 47 species
Ceric.22G051300.1 TOP1BETA, TOP1,... DNA topoisomerase *(TOP1) & original description:... 0.07 OrthoFinder output from all 47 species
Ceric.31G042500.1 TOP1BETA, TOP1,... DNA topoisomerase *(TOP1) & original description:... 0.06 OrthoFinder output from all 47 species
Dac_g05782 MGO1, TOP1, TOP1ALPHA DNA topoisomerase *(TOP1) & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g10405 TOP1BETA, TOP1 DNA topoisomerase *(TOP1) & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01020301001 MGO1, TOP1, TOP1ALPHA Cell cycle.interphase.DNA replication.preinitiation.TOP1... 0.07 OrthoFinder output from all 47 species
Gb_13084 TOP1BETA, TOP1 DNA topoisomerase (TOP1) 0.02 OrthoFinder output from all 47 species
Len_g17147 TOP1BETA, TOP1 DNA topoisomerase *(TOP1) & original description: none 0.02 OrthoFinder output from all 47 species
Len_g35774 TOP1BETA, TOP1 DNA topoisomerase *(TOP1) & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g04991 TOP1BETA, TOP1 DNA topoisomerase *(TOP1) & original description: none 0.04 OrthoFinder output from all 47 species
Mp6g05370.1 TOP1BETA, TOP1 DNA topoisomerase (TOP1) 0.03 OrthoFinder output from all 47 species
Msp_g13694 TOP1BETA, TOP1 DNA topoisomerase *(TOP1) & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g05911 TOP1BETA, TOP1 DNA topoisomerase *(TOP1) & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g29614 TOP1BETA, TOP1 DNA topoisomerase *(TOP1) & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g41412 TOP1BETA, TOP1 DNA topoisomerase *(TOP1) & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g11791 TOP1BETA, TOP1 DNA topoisomerase *(TOP1) & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g03945 TOP1BETA, TOP1 DNA topoisomerase *(TOP1) & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g04685 TOP1BETA, TOP1 DNA topoisomerase *(TOP1) & original description: none 0.02 OrthoFinder output from all 47 species
Smo109207 TOP1BETA, TOP1 Cell cycle.interphase.DNA replication.preinitiation.TOP1... 0.02 OrthoFinder output from all 47 species
Smo145504 TOP1BETA, TOP1 Cell cycle.interphase.DNA replication.preinitiation.TOP1... 0.03 OrthoFinder output from all 47 species
Solyc07g049720.4.1 MGO1, TOP1,... DNA topoisomerase (TOP1) 0.04 OrthoFinder output from all 47 species
Spa_g18323 TOP1BETA, TOP1 DNA topoisomerase *(TOP1) & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g27008 TOP1BETA, TOP1 DNA topoisomerase *(TOP1) & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0003917 DNA topoisomerase type I (single strand cut, ATP-independent) activity IEA Interproscan
MF GO:0003918 DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity IEA Interproscan
CC GO:0005694 chromosome IEA Interproscan
BP GO:0006265 DNA topological change IEA Interproscan
Type GO Term Name Evidence Source
CC GO:0000148 1,3-beta-D-glucan synthase complex IEP HCCA
MF GO:0000155 phosphorelay sensor kinase activity IEP HCCA
MF GO:0000156 phosphorelay response regulator activity IEP HCCA
BP GO:0000160 phosphorelay signal transduction system IEP HCCA
MF GO:0000166 nucleotide binding IEP HCCA
BP GO:0000271 polysaccharide biosynthetic process IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003843 1,3-beta-D-glucan synthase activity IEP HCCA
MF GO:0004222 metalloendopeptidase activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0004673 protein histidine kinase activity IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006073 cellular glucan metabolic process IEP HCCA
BP GO:0006074 (1->3)-beta-D-glucan metabolic process IEP HCCA
BP GO:0006075 (1->3)-beta-D-glucan biosynthetic process IEP HCCA
MF GO:0008237 metallopeptidase activity IEP HCCA
BP GO:0009250 glucan biosynthetic process IEP HCCA
MF GO:0016775 phosphotransferase activity, nitrogenous group as acceptor IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0033692 cellular polysaccharide biosynthetic process IEP HCCA
BP GO:0034637 cellular carbohydrate biosynthetic process IEP HCCA
MF GO:0035251 UDP-glucosyltransferase activity IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0044042 glucan metabolic process IEP HCCA
MF GO:0046527 glucosyltransferase activity IEP HCCA
BP GO:0051273 beta-glucan metabolic process IEP HCCA
BP GO:0051274 beta-glucan biosynthetic process IEP HCCA
MF GO:0060089 molecular transducer activity IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
CC GO:0098797 plasma membrane protein complex IEP HCCA
MF GO:0140299 small molecule sensor activity IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
InterPro domains Description Start Stop
IPR013500 TopoI_cat_euk 568 794
IPR008336 TopoI_DNA-bd_euk 354 566
IPR025834 TopoI_C_dom 829 875
No external refs found!