1. Home
  2. Species
  3. Amborella trichopoda
  4. Sequence
  5. AMTR_s00059p00150840

AMTR_s00059p00150840 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00059.137

Description : COMPASS-like H3K4 histone methylase component WDR5A OS=Arabidopsis thaliana


Gene families : OG0004990 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004990_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00059p00150840

Target Alias Description ECC score Gene Family Method Actions
Aev_g44956 No alias ubiquitin-binding adaptor *(UFD3) & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g02313 No alias ubiquitin-binding adaptor *(UFD3) & original description: none 0.02 OrthoFinder output from all 47 species
Len_g53943 No alias ubiquitin-binding adaptor *(UFD3) & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g11013 No alias ubiquitin-binding adaptor *(UFD3) & original description: none 0.03 OrthoFinder output from all 47 species
Mp8g18780.1 No alias ubiquitin-binding adaptor (UFD3) 0.04 OrthoFinder output from all 47 species
Pir_g44526 No alias ubiquitin-binding adaptor *(UFD3) & original description: none 0.04 OrthoFinder output from all 47 species
Solyc01g109350.3.1 Solyc01g109350 ubiquitin-binding adaptor (UFD3) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
BP GO:0051205 protein insertion into membrane IEP HCCA
BP GO:0051668 localization within membrane IEP HCCA
BP GO:0072657 protein localization to membrane IEP HCCA
BP GO:0090150 establishment of protein localization to membrane IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR001680 WD40_repeat 266 294
IPR001680 WD40_repeat 181 217
IPR001680 WD40_repeat 13 45
IPR001680 WD40_repeat 223 257
IPR013535 PUL_dom 486 754
IPR015155 PFU 340 451
No external refs found!