Aliases : CHB3, ATSWI3D, evm_27.TU.AmTr_v1.0_scaffold00059.47
Description : Chromatin organisation.chromatin remodeling complexes.additional core components.BAF255/170 component
Gene families : OG0000817 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000817_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AT4G34430 | CHB3, ATSWI3D | DNA-binding family protein | 0.04 | OrthoFinder output from all 47 species | |
Ala_g02056 | SWI3A, CHB1, ATSWI3A | SMARCC component *(SWI3) of chromatin remodeling complex... | 0.02 | OrthoFinder output from all 47 species | |
Aop_g08555 | CHB4, SWI3C, ATSWI3C | SMARCC component *(SWI3) of chromatin remodeling complex... | 0.03 | OrthoFinder output from all 47 species | |
Cba_g15169 | CHB3, ATSWI3D | SMARCC component *(SWI3) of chromatin remodeling complex... | 0.02 | OrthoFinder output from all 47 species | |
Ceric.17G074300.1 | CHB3, ATSWI3D,... | SMARCC component *(SWI3) of chromatin remodeling complex... | 0.02 | OrthoFinder output from all 47 species | |
Ceric.18G048000.1 | SWI3A, CHB1,... | SMARCC component *(SWI3) of chromatin remodeling complex... | 0.04 | OrthoFinder output from all 47 species | |
Ceric.22G071000.1 | CHB3, ATSWI3D,... | SMARCC component *(SWI3) of chromatin remodeling complex... | 0.04 | OrthoFinder output from all 47 species | |
Dcu_g03107 | CHB3, ATSWI3D | SMARCC component *(SWI3) of chromatin remodeling complex... | 0.02 | OrthoFinder output from all 47 species | |
Ehy_g12222 | SWI3A, CHB1, ATSWI3A | SMARCC component *(SWI3) of chromatin remodeling complex... | 0.04 | OrthoFinder output from all 47 species | |
Ehy_g16559 | CHB3, ATSWI3D | SMARCC component *(SWI3) of chromatin remodeling complex... | 0.03 | OrthoFinder output from all 47 species | |
GSVIVT01008831001 | CHB4, SWI3C, ATSWI3C | Chromatin organisation.chromatin remodeling... | 0.03 | OrthoFinder output from all 47 species | |
GSVIVT01031951001 | CHB3, ATSWI3D | Chromatin organisation.chromatin remodeling... | 0.04 | OrthoFinder output from all 47 species | |
LOC_Os02g10060.1 | CHB2, SWI3B,... | component BAF255/170 of chromatin remodeling complex | 0.04 | OrthoFinder output from all 47 species | |
LOC_Os03g51220.1 | CHB3, ATSWI3D,... | component BAF255/170 of chromatin remodeling complex | 0.03 | OrthoFinder output from all 47 species | |
LOC_Os04g40420.1 | SWI3A, CHB1,... | component BAF255/170 of chromatin remodeling complex | 0.07 | OrthoFinder output from all 47 species | |
Len_g07560 | CHB3, ATSWI3D | SMARCC component *(SWI3) of chromatin remodeling complex... | 0.03 | OrthoFinder output from all 47 species | |
Len_g14234 | CHB4, SWI3C, ATSWI3C | SMARCC component *(SWI3) of chromatin remodeling complex... | 0.02 | OrthoFinder output from all 47 species | |
Lfl_g08236 | CHB3, ATSWI3D | SMARCC component *(SWI3) of chromatin remodeling complex... | 0.03 | OrthoFinder output from all 47 species | |
Lfl_g08793 | CHB4, SWI3C, ATSWI3C | SMARCC component *(SWI3) of chromatin remodeling complex... | 0.02 | OrthoFinder output from all 47 species | |
Mp8g15610.1 | SWI3A, CHB1, ATSWI3A | component BAF255/170 of chromatin remodeling complex | 0.03 | OrthoFinder output from all 47 species | |
Ore_g28434 | CHB4, SWI3C, ATSWI3C | SMARCC component *(SWI3) of chromatin remodeling complex... | 0.03 | OrthoFinder output from all 47 species | |
Pnu_g27615 | CHB4, SWI3C, ATSWI3C | SMARCC component *(SWI3) of chromatin remodeling complex... | 0.04 | OrthoFinder output from all 47 species | |
Ppi_g01335 | CHB3, ATSWI3D | SMARCC component *(SWI3) of chromatin remodeling complex... | 0.02 | OrthoFinder output from all 47 species | |
Sam_g07213 | No alias | SMARCC component *(SWI3) of chromatin remodeling complex... | 0.03 | OrthoFinder output from all 47 species | |
Sam_g10332 | No alias | SMARCC component *(SWI3) of chromatin remodeling complex... | 0.03 | OrthoFinder output from all 47 species | |
Sam_g52721 | No alias | SMARCC component *(SWI3) of chromatin remodeling complex... | 0.03 | OrthoFinder output from all 47 species | |
Solyc01g109510.3.1 | CHB3, ATSWI3D,... | component BAF255/170 of chromatin remodeling complex | 0.03 | OrthoFinder output from all 47 species | |
Solyc03g097450.4.1 | SWI3A, CHB1,... | component BAF255/170 of chromatin remodeling complex | 0.03 | OrthoFinder output from all 47 species | |
Solyc04g082760.3.1 | CHB2, SWI3B,... | component BAF255/170 of chromatin remodeling complex | 0.03 | OrthoFinder output from all 47 species | |
Solyc06g060120.3.1 | CHB4, SWI3C,... | component BAF255/170 of chromatin remodeling complex | 0.04 | OrthoFinder output from all 47 species | |
Tin_g04137 | CHB3, ATSWI3D | SMARCC component *(SWI3) of chromaTin remodeling complex... | 0.02 | OrthoFinder output from all 47 species | |
Zm00001e012143_P002 | CHB3, ATSWI3D,... | component BAF255/170 of chromatin remodeling complex | 0.03 | OrthoFinder output from all 47 species | |
Zm00001e018409_P001 | CHB4, SWI3C,... | component BAF255/170 of chromatin remodeling complex | 0.03 | OrthoFinder output from all 47 species | |
Zm00001e024548_P001 | CHB4, SWI3C,... | component BAF255/170 of chromatin remodeling complex | 0.06 | OrthoFinder output from all 47 species |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003682 | chromatin binding | IEA | Interproscan |
MF | GO:0005515 | protein binding | IEA | Interproscan |
MF | GO:0008270 | zinc ion binding | IEA | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
CC | GO:0000123 | histone acetyltransferase complex | IEP | HCCA |
BP | GO:0000966 | RNA 5'-end processing | IEP | HCCA |
BP | GO:0001682 | tRNA 5'-leader removal | IEP | HCCA |
MF | GO:0003743 | translation initiation factor activity | IEP | HCCA |
MF | GO:0004221 | obsolete ubiquitin thiolesterase activity | IEP | HCCA |
MF | GO:0004518 | nuclease activity | IEP | HCCA |
MF | GO:0004519 | endonuclease activity | IEP | HCCA |
MF | GO:0004521 | endoribonuclease activity | IEP | HCCA |
MF | GO:0004526 | ribonuclease P activity | IEP | HCCA |
MF | GO:0004540 | ribonuclease activity | IEP | HCCA |
MF | GO:0004549 | tRNA-specific ribonuclease activity | IEP | HCCA |
BP | GO:0006399 | tRNA metabolic process | IEP | HCCA |
BP | GO:0006413 | translational initiation | IEP | HCCA |
BP | GO:0006511 | ubiquitin-dependent protein catabolic process | IEP | HCCA |
BP | GO:0008033 | tRNA processing | IEP | HCCA |
MF | GO:0008135 | translation factor activity, RNA binding | IEP | HCCA |
BP | GO:0009057 | macromolecule catabolic process | IEP | HCCA |
BP | GO:0009987 | cellular process | IEP | HCCA |
MF | GO:0016891 | endoribonuclease activity, producing 5'-phosphomonoesters | IEP | HCCA |
MF | GO:0016893 | endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters | IEP | HCCA |
BP | GO:0019941 | modification-dependent protein catabolic process | IEP | HCCA |
CC | GO:0031248 | protein acetyltransferase complex | IEP | HCCA |
BP | GO:0034470 | ncRNA processing | IEP | HCCA |
BP | GO:0034660 | ncRNA metabolic process | IEP | HCCA |
BP | GO:0043170 | macromolecule metabolic process | IEP | HCCA |
BP | GO:0043632 | modification-dependent macromolecule catabolic process | IEP | HCCA |
BP | GO:0044237 | cellular metabolic process | IEP | HCCA |
BP | GO:0044248 | cellular catabolic process | IEP | HCCA |
BP | GO:0044265 | cellular macromolecule catabolic process | IEP | HCCA |
MF | GO:0045182 | translation regulator activity | IEP | HCCA |
BP | GO:0051603 | proteolysis involved in protein catabolic process | IEP | HCCA |
CC | GO:0070461 | SAGA-type complex | IEP | HCCA |
MF | GO:0090079 | translation regulator activity, nucleic acid binding | IEP | HCCA |
BP | GO:0099116 | tRNA 5'-end processing | IEP | HCCA |
MF | GO:0140101 | catalytic activity, acting on a tRNA | IEP | HCCA |
CC | GO:0140535 | intracellular protein-containing complex | IEP | HCCA |
CC | GO:1902493 | acetyltransferase complex | IEP | HCCA |
CC | GO:1990234 | transferase complex | IEP | HCCA |
No external refs found! |