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  5. AMTR_s00058p00112040

AMTR_s00058p00112040 (PHB1, ATPHB1,...)


Aliases : PHB1, ATPHB1, evm_27.TU.AmTr_v1.0_scaffold00058.65

Description : Prohibitin-1, mitochondrial OS=Arabidopsis thaliana


Gene families : OG0002789 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002789_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00058p00112040

Target Alias Description ECC score Gene Family Method Actions
AT1G03860 PHB2, ATPHB2 prohibitin 2 0.03 OrthoFinder output from all 47 species
Aev_g00787 PHB1, ATPHB1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g00373 PHB1, ATPHB1 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Aspi01Gene50091.t1 PHB1, ATPHB1,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g06725 PHB1, ATPHB1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.02G011500.1 PHB1, ATPHB1,... not classified & original description: pacid=50584039... 0.04 OrthoFinder output from all 47 species
Dcu_g15221 PHB1, ATPHB1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g21632 PHB1, ATPHB1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01027465001 PHB1, ATPHB1 Prohibitin-1, mitochondrial OS=Arabidopsis thaliana 0.05 OrthoFinder output from all 47 species
GSVIVT01036736001 PHB1, ATPHB1 Prohibitin-1, mitochondrial OS=Arabidopsis thaliana 0.06 OrthoFinder output from all 47 species
Gb_24064 PHB1, ATPHB1 Prohibitin-1, mitochondrial OS=Arabidopsis thaliana... 0.07 OrthoFinder output from all 47 species
LOC_Os07g15880.1 PHB2, ATPHB2,... Prohibitin-2, mitochondrial OS=Arabidopsis thaliana... 0.13 OrthoFinder output from all 47 species
Len_g07864 PHB1, ATPHB1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g35119 PHB1, ATPHB1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g48441 PHB1, ATPHB1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
MA_9438062g0010 PHB1, ATPHB1 Prohibitin-1, mitochondrial OS=Arabidopsis thaliana... 0.09 OrthoFinder output from all 47 species
Mp1g10410.1 PHB1, ATPHB1 Prohibitin-2, mitochondrial OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Msp_g01082 PHB1, ATPHB1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g40562 PHB1, ATPHB1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g12045 PHB1, ATPHB1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pp3c25_1160V3.1 PHB1, ATPHB1, Pp3c25_1160 prohibitin 6 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0133.g022270 PHB1, ATPHB1 not classified & original description: CDS=199-1050 0.03 OrthoFinder output from all 47 species
Sam_g17556 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g28993 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Smo444067 PHB1, ATPHB1 Prohibitin-2, mitochondrial OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Solyc10g008140.3.1 PHB1, ATPHB1,... Prohibitin-2, mitochondrial OS=Arabidopsis thaliana... 0.07 OrthoFinder output from all 47 species
Spa_g21133 PHB1, ATPHB1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g00443 PHB1, ATPHB1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e009600_P001 PHB2, ATPHB2,... Prohibitin-2, mitochondrial OS=Arabidopsis thaliana... 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000175 3'-5'-exoribonuclease activity IEP HCCA
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0004527 exonuclease activity IEP HCCA
MF GO:0004532 exoribonuclease activity IEP HCCA
MF GO:0004540 ribonuclease activity IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0004827 proline-tRNA ligase activity IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005622 intracellular anatomical structure IEP HCCA
CC GO:0005730 nucleolus IEP HCCA
CC GO:0005741 mitochondrial outer membrane IEP HCCA
CC GO:0005840 ribosome IEP HCCA
BP GO:0006082 organic acid metabolic process IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006353 DNA-templated transcription termination IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006433 prolyl-tRNA aminoacylation IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0008408 3'-5' exonuclease activity IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016796 exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
MF GO:0016896 exoribonuclease activity, producing 5'-phosphomonoesters IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
BP GO:0019752 carboxylic acid metabolic process IEP HCCA
CC GO:0019867 outer membrane IEP HCCA
BP GO:0022613 ribonucleoprotein complex biogenesis IEP HCCA
CC GO:0031090 organelle membrane IEP HCCA
CC GO:0031966 mitochondrial membrane IEP HCCA
CC GO:0031968 organelle outer membrane IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0042254 ribosome biogenesis IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0043436 oxoacid metabolic process IEP HCCA
BP GO:0043603 amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
BP GO:0044085 cellular component biogenesis IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
CC GO:0098588 bounding membrane of organelle IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR001107 Band_7 40 217
No external refs found!