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  5. AMTR_s00057p00188300

AMTR_s00057p00188300 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00057.203

Description : Protein biosynthesis.aminoacyl-tRNA synthetase activities.tyrosine-tRNA ligase


Gene families : OG0004197 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004197_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00057p00188300
Cluster HCCA: Cluster_85

Target Alias Description ECC score Gene Family Method Actions
Cba_g06946 No alias EC_6.1 ligase forming carbon-oxygen bond & original... 0.03 OrthoFinder output from all 47 species
Dac_g07909 No alias EC_6.1 ligase forming carbon-oxygen bond & original... 0.03 OrthoFinder output from all 47 species
Zm00001e021758_P001 Zm00001e021758 tyrosine-tRNA ligase 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEA Interproscan
MF GO:0004812 aminoacyl-tRNA ligase activity IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
CC GO:0005737 cytoplasm IEA Interproscan
BP GO:0006418 tRNA aminoacylation for protein translation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004298 threonine-type endopeptidase activity IEP HCCA
MF GO:0005509 calcium ion binding IEP HCCA
CC GO:0005839 proteasome core complex IEP HCCA
BP GO:0051603 proteolysis involved in protein catabolic process IEP HCCA
MF GO:0070003 threonine-type peptidase activity IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
InterPro domains Description Start Stop
IPR002305 aa-tRNA-synth_Ic 74 367
No external refs found!