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  5. AMTR_s00049p00137690

AMTR_s00049p00137690 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00049.118

No description available


Gene families : OG0004660 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004660_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00049p00137690

Target Alias Description ECC score Gene Family Method Actions
AT1G13160 No alias ARM repeat superfamily protein 0.03 OrthoFinder output from all 47 species
Aob_g22171 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g60006 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g26211 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.37G033500.1 Ceric.37G033500 not classified & original description: pacid=50616272... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000545.36 No alias No description available 0.04 OrthoFinder output from all 47 species
Cre06.g277050 No alias No description available 0.03 OrthoFinder output from all 47 species
Ehy_g11716 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01000585001 No alias No description available 0.06 OrthoFinder output from all 47 species
Gb_20290 No alias no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Len_g13280 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_29597g0020 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Sam_g24206 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g06214 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e006853_P001 Zm00001e006853 no hits & (original description: none) 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003887 DNA-directed DNA polymerase activity IEP HCCA
MF GO:0003924 GTPase activity IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004527 exonuclease activity IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0004832 valine-tRNA ligase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006260 DNA replication IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006438 valyl-tRNA aminoacylation IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
MF GO:0008408 3'-5' exonuclease activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0034061 DNA polymerase activity IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR012977 SDA1_N 85 136
No external refs found!