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  5. AMTR_s00047p00194260

AMTR_s00047p00194260 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00047.123

Description : Pentatricopeptide repeat-containing protein At1g07590, mitochondrial OS=Arabidopsis thaliana


Gene families : OG0000613 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000613_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00047p00194260

Target Alias Description ECC score Gene Family Method Actions
Gb_14212 No alias RNA editing factor (POCO) 0.06 OrthoFinder output from all 47 species
Gb_14576 No alias Pentatricopeptide repeat-containing protein At1g60770... 0.02 OrthoFinder output from all 47 species
Gb_38114 No alias RNA editing factor (POCO) 0.04 OrthoFinder output from all 47 species
Msp_g42997 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g28147 No alias RNA editing factor *(POCO) & original description: none 0.01 OrthoFinder output from all 47 species
Sam_g51005 No alias RNA editing factor *(POCO) & original description: none 0.01 OrthoFinder output from all 47 species
Zm00001e012594_P001 Zm00001e012594 Pentatricopeptide repeat-containing protein At4g21705,... 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0004813 alanine-tRNA ligase activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
CC GO:0005795 Golgi stack IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006419 alanyl-tRNA aminoacylation IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
BP GO:0007165 signal transduction IEP HCCA
MF GO:0008378 galactosyltransferase activity IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
CC GO:0031984 organelle subcompartment IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
CC GO:0098791 Golgi apparatus subcompartment IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 368 409
IPR002885 Pentatricopeptide_repeat 448 472
IPR002885 Pentatricopeptide_repeat 332 359
IPR002885 Pentatricopeptide_repeat 228 253
IPR002885 Pentatricopeptide_repeat 194 224
No external refs found!