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  5. AMTR_s00032p00133570

AMTR_s00032p00133570 (LOS1,...)


Aliases : LOS1, evm_27.TU.AmTr_v1.0_scaffold00032.93

Description : Protein biosynthesis.translation elongation.eEF2 mRNA-translocation factor


Gene families : OG0001393 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001393_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00032p00133570
Cluster HCCA: Cluster_109

Target Alias Description ECC score Gene Family Method Actions
AT1G56070 LOS1 Ribosomal protein S5/Elongation factor G/III/V family protein 0.05 OrthoFinder output from all 47 species
Als_g14719 LOS1 mRNA-translocation factor *(eEF2)) & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene16058.t1 LOS1, Aspi01Gene16058 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.25G007600.1 LOS1, Ceric.25G007600 mRNA-translocation factor *(eEF2)) & original... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00021464.39 LOS1 Protein biosynthesis.translation elongation.eEF2... 0.03 OrthoFinder output from all 47 species
Cre12.g516200 LOS1 Protein biosynthesis.translation elongation.eEF2... 0.02 OrthoFinder output from all 47 species
GSVIVT01020404001 LOS1 Elongation factor 2 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
Gb_02896 LOS1 mRNA-translocation factor (eEF2) 0.02 OrthoFinder output from all 47 species
Gb_14897 LOS1 mRNA-translocation factor (eEF2) 0.02 OrthoFinder output from all 47 species
LOC_Os02g32030.1 LOS1, LOC_Os02g32030 mRNA-translocation factor (eEF2) 0.04 OrthoFinder output from all 47 species
LOC_Os04g02820.1 LOS1, LOC_Os04g02820 mRNA-translocation factor (eEF2) 0.05 OrthoFinder output from all 47 species
Lfl_g06654 LOS1 mRNA-translocation factor *(eEF2)) & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g23642 LOS1 mRNA-translocation factor *(eEF2)) & original description: none 0.02 OrthoFinder output from all 47 species
MA_10426758g0010 LOS1 transcription factor (TUB) 0.03 OrthoFinder output from all 47 species
Mp2g20190.1 LOS1 mRNA-translocation factor (eEF2) 0.04 OrthoFinder output from all 47 species
Mp2g20200.1 LOS1 mRNA-translocation factor (eEF2) 0.04 OrthoFinder output from all 47 species
Msp_g08640 LOS1 mRNA-translocation factor *(eEF2)) & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g09744 LOS1 mRNA-translocation factor *(eEF2)) & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g25612 LOS1 mRNA-translocation factor *(eEF2)) & original description: none 0.02 OrthoFinder output from all 47 species
Pp3c7_1950V3.1 LOS1, Pp3c7_1950 Ribosomal protein S5/Elongation factor G/III/V family protein 0.02 OrthoFinder output from all 47 species
Pp3s128_50V3.1 LOS1, Pp3s128_50 Ribosomal protein S5/Elongation factor G/III/V family protein 0.01 OrthoFinder output from all 47 species
Sam_g38282 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g49446 No alias mRNA-translocation factor *(eEF2)) & original description: none 0.03 OrthoFinder output from all 47 species
Solyc08g062910.4.1 LOS1, Solyc08g062910 mRNA-translocation factor (eEF2) 0.05 OrthoFinder output from all 47 species
Solyc08g062920.3.1 LOS1, Solyc08g062920 mRNA-translocation factor (eEF2) 0.07 OrthoFinder output from all 47 species
Spa_g06406 LOS1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g56829 LOS1 mRNA-translocation factor *(eEF2)) & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e006293_P001 LOS1, Zm00001e006293 mRNA-translocation factor (eEF2) 0.05 OrthoFinder output from all 47 species
Zm00001e006294_P001 LOS1, Zm00001e006294 mRNA-translocation factor (eEF2) 0.05 OrthoFinder output from all 47 species
Zm00001e029078_P002 LOS1, Zm00001e029078 mRNA-translocation factor (eEF2) 0.12 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003924 GTPase activity IEA Interproscan
MF GO:0005525 GTP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003743 translation initiation factor activity IEP HCCA
MF GO:0004611 phosphoenolpyruvate carboxykinase activity IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP HCCA
BP GO:0006099 tricarboxylic acid cycle IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
MF GO:0008641 ubiquitin-like modifier activating enzyme activity IEP HCCA
MF GO:0008964 phosphoenolpyruvate carboxylase activity IEP HCCA
BP GO:0015977 carbon fixation IEP HCCA
MF GO:0016831 carboxy-lyase activity IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
MF GO:0016877 ligase activity, forming carbon-sulfur bonds IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
InterPro domains Description Start Stop
IPR000795 T_Tr_GTP-bd_dom 17 341
IPR004161 EFTu-like_2 393 468
IPR000640 EFG_V-like 725 811
IPR005517 Transl_elong_EFG/EF2_IV 606 721
No external refs found!