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  5. AMTR_s00025p00208510

AMTR_s00025p00208510 (RPN13,...)


Aliases : RPN13, evm_27.TU.AmTr_v1.0_scaffold00025.272

Description : Protein degradation.26S proteasome.regulatory particle.non-ATPase subunits.RPN13 regulatory component


Gene families : OG0005876 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005876_tree

Sequence : coding (download), protein (download)


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Type Description Actions
Neighborhood HRR: AMTR_s00025p00208510

Target Alias Description ECC score Gene Family Method Actions
Azfi_s0073.g037247 RPN13 regulatory component *(RPN13) of 26S proteasome &... 0.02 OrthoFinder output from all 47 species
Ceric.29G052500.1 RPN13, Ceric.29G052500 regulatory component *(RPN13) of 26S proteasome &... 0.04 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020592.56 No alias Protein degradation.26S proteasome.regulatory... 0.02 OrthoFinder output from all 47 species
Solyc07g017400.3.1 RPN13, Solyc07g017400 regulatory component RPN13 of 26S proteasome 0.03 OrthoFinder output from all 47 species
Zm00001e032559_P001 RPN13, Zm00001e032559 regulatory component RPN13 of 26S proteasome 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0005634 nucleus IEA Interproscan
CC GO:0005737 cytoplasm IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000049 tRNA binding IEP HCCA
MF GO:0000287 magnesium ion binding IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0004826 phenylalanine-tRNA ligase activity IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
BP GO:0006357 regulation of transcription by RNA polymerase II IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006432 phenylalanyl-tRNA aminoacylation IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
CC GO:0016592 mediator complex IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
MF GO:0043169 cation binding IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
InterPro domains Description Start Stop
IPR006773 Rpn13/ADRM1 64 146
No external refs found!