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  5. AMTR_s00022p00154500

AMTR_s00022p00154500 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00022.156

Description : RNA biosynthesis.RNA polymerase I-dependent transcription.TFIa/RRN3 basal transcription factor


Gene families : OG0004620 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004620_tree

Sequence : coding (download), protein (download)


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Type Description Actions
Neighborhood HRR: AMTR_s00022p00154500

Target Alias Description ECC score Gene Family Method Actions
Aop_g07110 No alias basal transcription factor *(TFIa/RRN3) & original... 0.03 OrthoFinder output from all 47 species
Pir_g17890 No alias basal transcription factor *(TFIa/RRN3) & original... 0.02 OrthoFinder output from all 47 species
Sam_g27581 No alias basal transcription factor *(TFIa/RRN3) & original... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000049 tRNA binding IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
MF GO:0005543 phospholipid binding IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
CC GO:0005938 cell cortex IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
MF GO:0008289 lipid binding IEP HCCA
BP GO:0009987 cellular process IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
BP GO:0032065 maintenance of protein location in cell cortex IEP HCCA
BP GO:0032507 maintenance of protein location in cell IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
MF GO:0043167 ion binding IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0045185 maintenance of protein location IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0051235 maintenance of location IEP HCCA
BP GO:0051651 maintenance of location in cell IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR007991 RNA_pol_I_trans_ini_fac_RRN3 32 559
No external refs found!