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  5. AMTR_s00016p00242110

AMTR_s00016p00242110 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00016.258

Description : ATP-dependent DNA helicase At3g02060, chloroplastic OS=Arabidopsis thaliana


Gene families : OG0004721 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004721_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00016p00242110

Target Alias Description ECC score Gene Family Method Actions
AT3G02060 No alias DEAD/DEAH box helicase, putative 0.07 OrthoFinder output from all 47 species
Aev_g07951 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g17279 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene67885.t1 Aspi01Gene67885 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0257.g060601 No alias not classified & original description: CDS=200-3178 0.03 OrthoFinder output from all 47 species
Cba_g18567 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.13G022800.1 Ceric.13G022800 not classified & original description: pacid=50636376... 0.06 OrthoFinder output from all 47 species
Dde_g04918 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g08581 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
LOC_Os11g32880.1 LOC_Os11g32880 ATP-dependent DNA helicase At3g02060, chloroplastic... 0.04 OrthoFinder output from all 47 species
Lfl_g05693 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_190693g0010 No alias ATP-dependent DNA helicase At3g02060, chloroplastic... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0015.g006439 No alias not classified & original description: CDS=315-2762 0.03 OrthoFinder output from all 47 species
Sam_g42734 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Solyc02g094590.3.1 Solyc02g094590 ATP-dependent DNA helicase At3g02060, chloroplastic... 0.02 OrthoFinder output from all 47 species
Tin_g27619 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e011170_P004 Zm00001e011170 ATP-dependent DNA helicase At3g02060, chloroplastic... 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0004386 helicase activity IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004345 glucose-6-phosphate dehydrogenase activity IEP HCCA
MF GO:0004519 endonuclease activity IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
BP GO:0005996 monosaccharide metabolic process IEP HCCA
BP GO:0006006 glucose metabolic process IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0008033 tRNA processing IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
BP GO:0019318 hexose metabolic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
MF GO:0050661 NADP binding IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR011545 DEAD/DEAH_box_helicase_dom 356 496
IPR003711 CarD-like/TRCF_RID 206 306
IPR001650 Helicase_C 569 641
No external refs found!