AMTR_s00013p00262410 (AT-HSFA5, HSFA5,...)

Aliases : AT-HSFA5, HSFA5, evm_27.TU.AmTr_v1.0_scaffold00013.281

Description : RNA biosynthesis.transcriptional activation.HSF (heat shock) transcription factor

Gene families : OG0000093 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000093_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AMTR_s00013p00262410

Target	Alias	Description	ECC score	Gene Family Method
Dde_g13390	HSFA1B, ATHSF3,...	HSF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
GSVIVT01020781001	HSFA4C, RHA1, AT-HSFA4C	RNA biosynthesis.transcriptional activation.HSF (heat...	0.02	OrthoFinder output from all 47 species
LOC_Os02g32590.1	HSFA3, AT-HSFA3,...	transcription factor (HSF)	0.04	OrthoFinder output from all 47 species
LOC_Os03g12370.1	HSFA1B, ATHSF3,...	transcription factor (HSF)	0.03	OrthoFinder output from all 47 species
MA_110587g0010	HSFB4, SCZ, AT-HSFB4	transcription factor (HSF)	0.03	OrthoFinder output from all 47 species
MA_8812600g0010	HSFB4, SCZ, AT-HSFB4	transcription factor (HSF)	0.02	OrthoFinder output from all 47 species
Solyc02g090820.3.1	HSF4, HSFB1,...	transcription factor (HSF)	0.04	OrthoFinder output from all 47 species
Solyc03g006000.3.1	HSF A4A,...	transcription factor (HSF)	0.03	OrthoFinder output from all 47 species
Zm00001e032174_P001	HSFA4C, RHA1,...	transcription factor (HSF)	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	None	Extended
MF	GO:0003700	DNA-binding transcription factor activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
MF	GO:0043565	sequence-specific DNA binding	IEA	Interproscan
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003723	RNA binding	IEP	HCCA
MF	GO:0003964	RNA-directed DNA polymerase activity	IEP	HCCA
BP	GO:0006259	DNA metabolic process	IEP	HCCA
BP	GO:0006278	RNA-templated DNA biosynthetic process	IEP	HCCA
BP	GO:0006396	RNA processing	IEP	HCCA
BP	GO:0006397	mRNA processing	IEP	HCCA
BP	GO:0016070	RNA metabolic process	IEP	HCCA
BP	GO:0016071	mRNA metabolic process	IEP	HCCA
MF	GO:0016779	nucleotidyltransferase activity	IEP	HCCA
BP	GO:0018130	heterocycle biosynthetic process	IEP	HCCA
BP	GO:0019438	aromatic compound biosynthetic process	IEP	HCCA
MF	GO:0034061	DNA polymerase activity	IEP	HCCA
BP	GO:0034654	nucleobase-containing compound biosynthetic process	IEP	HCCA
BP	GO:0071897	DNA biosynthetic process	IEP	HCCA
MF	GO:0140097	catalytic activity, acting on DNA	IEP	HCCA
BP	GO:1901362	organic cyclic compound biosynthetic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000232	HSF_DNA-bd	22	112

External Links

No external refs found!

AMTR_s00013p00262410 (AT-HSFA5, HSFA5,...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation