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  5. AMTR_s00009p00224110

AMTR_s00009p00224110 (HCF106,...)


Aliases : HCF106, evm_27.TU.AmTr_v1.0_scaffold00009.171

Description : Protein translocation.chloroplast.thylakoid membrane Tat translocation system.Hcf106 component


Gene families : OG0005619 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005619_tree

Sequence : coding (download), protein (download)


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Type Description Actions
Neighborhood HRR: AMTR_s00009p00224110

Target Alias Description ECC score Gene Family Method Actions
Adi_g013959 HCF106 component *(cpTatB) of thylakoid membrane Tat... 0.03 OrthoFinder output from all 47 species
Aob_g02696 HCF106 component *(cpTatB) of thylakoid membrane Tat... 0.03 OrthoFinder output from all 47 species
Cre08.g371650 HCF106 Protein translocation.chloroplast.thylakoid membrane Tat... 0.02 OrthoFinder output from all 47 species
Dde_g06214 HCF106 component *(cpTatB) of thylakoid membrane Tat... 0.02 OrthoFinder output from all 47 species
GSVIVT01028894001 HCF106 Protein translocation.chloroplast.thylakoid membrane Tat... 0.05 OrthoFinder output from all 47 species
LOC_Os11g37130.1 HCF106, LOC_Os11g37130 HCF106 protein involved in PS-II assembly. component... 0.04 OrthoFinder output from all 47 species
Len_g14600 HCF106 component *(cpTatB) of thylakoid membrane Tat... 0.04 OrthoFinder output from all 47 species
MA_919815g0010 HCF106 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Ppi_g07318 HCF106 component *(cpTatB) of thylakoid membrane Tat... 0.02 OrthoFinder output from all 47 species
Sam_g08783 No alias component *(cpTatB) of thylakoid membrane Tat... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0008565 obsolete protein transporter activity IEA Interproscan
BP GO:0015031 protein transport IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0004813 alanine-tRNA ligase activity IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006419 alanyl-tRNA aminoacylation IEP HCCA
BP GO:0006605 protein targeting IEP HCCA
MF GO:0016651 oxidoreductase activity, acting on NAD(P)H IEP HCCA
MF GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor IEP HCCA
MF GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds IEP HCCA
MF GO:0016872 intramolecular lyase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
BP GO:0022613 ribonucleoprotein complex biogenesis IEP HCCA
BP GO:0042254 ribosome biogenesis IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
BP GO:0044085 cellular component biogenesis IEP HCCA
InterPro domains Description Start Stop
IPR003369 TatA/B/E 68 118
No external refs found!