AMTR_s00009p00207870 (RAN3, ATRAN3,...)

Aliases : RAN3, ATRAN3, evm_27.TU.AmTr_v1.0_scaffold00009.135

Description : Protein translocation.nucleus.nucleocytoplasmic transport.Ran GTPase

Gene families : OG0000916 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000916_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AMTR_s00009p00207870

Target	Alias	Description	ECC score	Gene Family Method
AT5G20020	RAN2	RAS-related GTP-binding nuclear protein 2	0.04	OrthoFinder output from all 47 species
Adi_g054055	RAN1, RAN-1, ATRAN1	GTPase *(Ran) & original description: none	0.03	OrthoFinder output from all 47 species
Als_g13007	RAN3, ATRAN3	GTPase *(Ran) & original description: none	0.03	OrthoFinder output from all 47 species
Aop_g51668	RAN3, ATRAN3	GTPase *(Ran) & original description: none	0.05	OrthoFinder output from all 47 species
Cba_g31120	RAN1, RAN-1, ATRAN1	GTPase *(Ran) & original description: none	0.02	OrthoFinder output from all 47 species
MA_10427158g0010	RAN2	Ran GTPase	0.03	OrthoFinder output from all 47 species
Mp2g19920.1	RAN2	Ran GTPase	0.04	OrthoFinder output from all 47 species
Nbi_g04585	RAN3, ATRAN3	GTPase *(Ran) & original description: none	0.02	OrthoFinder output from all 47 species
Smo270966	RAN2	Protein translocation.nucleus.nucleocytoplasmic...	0.02	OrthoFinder output from all 47 species
Solyc01g104700.4.1	RAN2, Solyc01g104700	Ran GTPase	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005525	GTP binding	IEA	Interproscan
BP	GO:0007165	signal transduction	None	Extended
BP	GO:0007264	small GTPase mediated signal transduction	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0019001	guanyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032561	guanyl ribonucleotide binding	None	Extended
BP	GO:0035556	intracellular signal transduction	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0004812	aminoacyl-tRNA ligase activity	IEP	HCCA
CC	GO:0005737	cytoplasm	IEP	HCCA
BP	GO:0006399	tRNA metabolic process	IEP	HCCA
BP	GO:0006418	tRNA aminoacylation for protein translation	IEP	HCCA
BP	GO:0006520	amino acid metabolic process	IEP	HCCA
MF	GO:0016874	ligase activity	IEP	HCCA
MF	GO:0016875	ligase activity, forming carbon-oxygen bonds	IEP	HCCA
MF	GO:0016879	ligase activity, forming carbon-nitrogen bonds	IEP	HCCA
MF	GO:0016881	acid-amino acid ligase activity	IEP	HCCA
BP	GO:0034660	ncRNA metabolic process	IEP	HCCA
BP	GO:0043038	amino acid activation	IEP	HCCA
BP	GO:0043039	tRNA aminoacylation	IEP	HCCA
MF	GO:0140098	catalytic activity, acting on RNA	IEP	HCCA
MF	GO:0140101	catalytic activity, acting on a tRNA	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001806	Small_GTPase	15	171

External Links

No external refs found!