AMTR_s00006p00253660 (evm_27.TU.AmTr_v1.0_sc...)

Aliases : evm_27.TU.AmTr_v1.0_scaffold00006.171

Description : Cell cycle.organelle machineries.DNA replication.type-Ia DNA topoisomerase

Gene families : OG0003699 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003699_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AMTR_s00006p00253660
Cluster	HCCA: Cluster_101

Target	Alias	Description	ECC score	Gene Family Method
AT4G31210	No alias	DNA topoisomerase, type IA, core	0.09	OrthoFinder output from all 47 species
Adi_g021892	No alias	type-Ia DNA topoisomerase & original description: none	0.02	OrthoFinder output from all 47 species
Aev_g16434	No alias	type-Ia DNA topoisomerase & original description: none	0.02	OrthoFinder output from all 47 species
Als_g48687	No alias	type-Ia DNA topoisomerase & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene24211.t1	Aspi01Gene24211	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Azfi_s0066.g036119	No alias	type-Ia DNA topoisomerase & original description: CDS=286-3858	0.03	OrthoFinder output from all 47 species
Cba_g27398	No alias	type-Ia DNA topoisomerase & original description: none	0.02	OrthoFinder output from all 47 species
Cba_g78123	No alias	type-Ia DNA topoisomerase & original description: none	0.03	OrthoFinder output from all 47 species
Ceric.1Z115300.1	Ceric.1Z115300	not classified & original description: pacid=50604734...	0.05	OrthoFinder output from all 47 species
Ceric.22G057500.1	Ceric.22G057500	type-Ia DNA topoisomerase & original description:...	0.06	OrthoFinder output from all 47 species
Dcu_g02044	No alias	type-Ia DNA topoisomerase & original description: none	0.02	OrthoFinder output from all 47 species
GSVIVT01035576001	No alias	Cell cycle.organelle machineries.DNA replication.type-Ia...	0.07	OrthoFinder output from all 47 species
Gb_30151	No alias	type-Ia DNA topoisomerase	0.05	OrthoFinder output from all 47 species
LOC_Os06g16980.1	LOC_Os06g16980	type-Ia DNA topoisomerase	0.03	OrthoFinder output from all 47 species
Lfl_g10335	No alias	type-Ia DNA topoisomerase & original description: none	0.02	OrthoFinder output from all 47 species
MA_10435445g0010	No alias	type-Ia DNA topoisomerase	0.04	OrthoFinder output from all 47 species
Nbi_g42340	No alias	type-Ia DNA topoisomerase & original description: none	0.02	OrthoFinder output from all 47 species
Ore_g17408	No alias	type-Ia DNA topoisomerase & original description: none	0.02	OrthoFinder output from all 47 species
Ore_g21728	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Ore_g37104	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Pir_g12244	No alias	type-Ia DNA topoisomerase & original description: none	0.02	OrthoFinder output from all 47 species
Ppi_g49243	No alias	type-Ia DNA topoisomerase & original description: none	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0226.g026330	No alias	type-Ia DNA topoisomerase & original description: CDS=286-4206	0.04	OrthoFinder output from all 47 species
Sam_g28178	No alias	type-Ia DNA topoisomerase & original description: none	0.02	OrthoFinder output from all 47 species
Solyc02g081910.2.1	Solyc02g081910	type-Ia DNA topoisomerase	0.05	OrthoFinder output from all 47 species
Zm00001e030979_P001	Zm00001e030979	type-Ia DNA topoisomerase	0.05	OrthoFinder output from all 47 species
Zm00001e036824_P001	Zm00001e036824	type-Ia DNA topoisomerase	0.06	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003916	DNA topoisomerase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005694	chromosome	IEA	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006265	DNA topological change	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006996	organelle organization	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
MF	GO:0016853	isomerase activity	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0051276	chromosome organization	None	Extended
BP	GO:0071103	DNA conformation change	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140097	catalytic activity, acting on DNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	IEP	HCCA
MF	GO:0003887	DNA-directed DNA polymerase activity	IEP	HCCA
MF	GO:0004222	metalloendopeptidase activity	IEP	HCCA
MF	GO:0004527	exonuclease activity	IEP	HCCA
MF	GO:0005319	lipid transporter activity	IEP	HCCA
MF	GO:0005342	organic acid transmembrane transporter activity	IEP	HCCA
MF	GO:0005343	organic acid:sodium symporter activity	IEP	HCCA
MF	GO:0005524	ATP binding	IEP	HCCA
BP	GO:0006260	DNA replication	IEP	HCCA
BP	GO:0006397	mRNA processing	IEP	HCCA
BP	GO:0006814	sodium ion transport	IEP	HCCA
MF	GO:0008028	monocarboxylic acid transmembrane transporter activity	IEP	HCCA
MF	GO:0008237	metallopeptidase activity	IEP	HCCA
MF	GO:0008408	3'-5' exonuclease activity	IEP	HCCA
MF	GO:0008508	bile acid:sodium symporter activity	IEP	HCCA
MF	GO:0015081	sodium ion transmembrane transporter activity	IEP	HCCA
MF	GO:0015125	bile acid transmembrane transporter activity	IEP	HCCA
MF	GO:0015293	symporter activity	IEP	HCCA
MF	GO:0015294	solute:monoatomic cation symporter activity	IEP	HCCA
MF	GO:0015355	secondary active monocarboxylate transmembrane transporter activity	IEP	HCCA
MF	GO:0015370	solute:sodium symporter activity	IEP	HCCA
BP	GO:0016071	mRNA metabolic process	IEP	HCCA
MF	GO:0016787	hydrolase activity	IEP	HCCA
MF	GO:0016788	hydrolase activity, acting on ester bonds	IEP	HCCA
MF	GO:0017076	purine nucleotide binding	IEP	HCCA
MF	GO:0022853	active monoatomic ion transmembrane transporter activity	IEP	HCCA
MF	GO:0030554	adenyl nucleotide binding	IEP	HCCA
MF	GO:0032553	ribonucleotide binding	IEP	HCCA
MF	GO:0032555	purine ribonucleotide binding	IEP	HCCA
MF	GO:0032559	adenyl ribonucleotide binding	IEP	HCCA
MF	GO:0034061	DNA polymerase activity	IEP	HCCA
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	HCCA
MF	GO:0036094	small molecule binding	IEP	HCCA
MF	GO:0043168	anion binding	IEP	HCCA
MF	GO:0046943	carboxylic acid transmembrane transporter activity	IEP	HCCA
MF	GO:0097367	carbohydrate derivative binding	IEP	HCCA
MF	GO:0140161	monocarboxylate:sodium symporter activity	IEP	HCCA
MF	GO:1901265	nucleoside phosphate binding	IEP	HCCA
MF	GO:1901618	organic hydroxy compound transmembrane transporter activity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR013498	Topo_IA_Znf	979	1013
IPR006171	TOPRIM_domain	370	483
IPR013497	Topo_IA_cen	498	936

External Links

No external refs found!

AMTR_s00006p00253660 (evm_27.TU.AmTr_v1.0_sc...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation