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  5. AMTR_s00006p00248680

AMTR_s00006p00248680 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00006.139

No description available


Gene families : OG0008988 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0008988_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00006p00248680
Cluster HCCA: Cluster_71

Target Alias Description ECC score Gene Family Method Actions
AT1G13470 No alias Protein of unknown function (DUF1262) 0.04 OrthoFinder output from all 47 species
AT1G13480 No alias Protein of unknown function (DUF1262) 0.05 OrthoFinder output from all 47 species
AT1G13490 No alias Protein of unknown function (DUF1262) 0.05 OrthoFinder output from all 47 species
AT1G13510 No alias Protein of unknown function (DUF1262) 0.05 OrthoFinder output from all 47 species
AT1G13520 No alias Protein of unknown function (DUF1262) 0.05 OrthoFinder output from all 47 species
AT1G13540 No alias Protein of unknown function (DUF1262) 0.04 OrthoFinder output from all 47 species
AT1G61600 No alias Protein of unknown function (DUF1262) 0.03 OrthoFinder output from all 47 species
GSVIVT01012026001 No alias No description available 0.04 OrthoFinder output from all 47 species
LOC_Os08g31890.1 LOC_Os08g31890 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
MA_8352311g0010 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
MA_98223g0010 No alias no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
Solyc05g010460.4.1 Solyc05g010460 no hits & (original description: none) 0.06 OrthoFinder output from all 47 species
Zm00001e022372_P001 Zm00001e022372 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004180 carboxypeptidase activity IEP HCCA
MF GO:0004185 serine-type carboxypeptidase activity IEP HCCA
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP HCCA
MF GO:0004568 chitinase activity IEP HCCA
BP GO:0006022 aminoglycan metabolic process IEP HCCA
BP GO:0006026 aminoglycan catabolic process IEP HCCA
BP GO:0006030 chitin metabolic process IEP HCCA
BP GO:0006032 chitin catabolic process IEP HCCA
BP GO:0006040 amino sugar metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
MF GO:0008061 chitin binding IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0008233 peptidase activity IEP HCCA
MF GO:0008236 serine-type peptidase activity IEP HCCA
MF GO:0008238 exopeptidase activity IEP HCCA
BP GO:0009056 catabolic process IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP HCCA
BP GO:0016998 cell wall macromolecule catabolic process IEP HCCA
MF GO:0017171 serine hydrolase activity IEP HCCA
MF GO:0020037 heme binding IEP HCCA
MF GO:0042802 identical protein binding IEP HCCA
BP GO:0043086 negative regulation of catalytic activity IEP HCCA
BP GO:0044036 cell wall macromolecule metabolic process IEP HCCA
BP GO:0044092 negative regulation of molecular function IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
BP GO:0046348 amino sugar catabolic process IEP HCCA
MF GO:0046906 tetrapyrrole binding IEP HCCA
BP GO:0050790 regulation of catalytic activity IEP HCCA
BP GO:0055114 obsolete oxidation-reduction process IEP HCCA
BP GO:0065009 regulation of molecular function IEP HCCA
MF GO:0070008 serine-type exopeptidase activity IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:1901071 glucosamine-containing compound metabolic process IEP HCCA
BP GO:1901072 glucosamine-containing compound catabolic process IEP HCCA
BP GO:1901135 carbohydrate derivative metabolic process IEP HCCA
BP GO:1901136 carbohydrate derivative catabolic process IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
BP GO:1901565 organonitrogen compound catabolic process IEP HCCA
BP GO:1901575 organic substance catabolic process IEP HCCA

No InterPro domains available for this sequence

No external refs found!