AMTR_s00006p00184140 (evm_27.TU.AmTr_v1.0_sc...)

Aliases : evm_27.TU.AmTr_v1.0_scaffold00006.79

Description : DExH-box ATP-dependent RNA helicase DExH3 OS=Arabidopsis thaliana

Gene families : OG0000629 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000629_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AMTR_s00006p00184140
Cluster	HCCA: Cluster_64

Target	Alias	Description	ECC score	Gene Family Method
Aspi01Gene66410.t1	Aspi01Gene66410	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Ceric.1Z227800.1	Ceric.1Z227800	not classified & original description: pacid=50639140...	0.03	OrthoFinder output from all 47 species
Ceric.20G077000.1	Ceric.20G077000	not classified & original description: pacid=50565979...	0.02	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000786.1	No alias	DExH-box ATP-dependent RNA helicase DExH3 OS=Arabidopsis thaliana	0.02	OrthoFinder output from all 47 species
GSVIVT01022608001	No alias	DExH-box ATP-dependent RNA helicase DExH1 OS=Arabidopsis thaliana	0.03	OrthoFinder output from all 47 species
GSVIVT01023271001	No alias	DExH-box ATP-dependent RNA helicase DExH7, chloroplastic...	0.04	OrthoFinder output from all 47 species
Gb_05411	No alias	DExH-box ATP-dependent RNA helicase DExH7, chloroplastic...	0.03	OrthoFinder output from all 47 species
Len_g47532	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Pir_g12240	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0003723	RNA binding	None	Extended
MF	GO:0003725	double-stranded RNA binding	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004386	helicase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
MF	GO:0140657	ATP-dependent activity	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0004190	aspartic-type endopeptidase activity	IEP	HCCA
CC	GO:0005643	nuclear pore	IEP	HCCA
BP	GO:0006886	intracellular protein transport	IEP	HCCA
BP	GO:0008104	protein localization	IEP	HCCA
MF	GO:0008565	obsolete protein transporter activity	IEP	HCCA
BP	GO:0015031	protein transport	IEP	HCCA
BP	GO:0033036	macromolecule localization	IEP	HCCA
BP	GO:0045184	establishment of protein localization	IEP	HCCA
BP	GO:0046907	intracellular transport	IEP	HCCA
BP	GO:0051649	establishment of localization in cell	IEP	HCCA
MF	GO:0070001	aspartic-type peptidase activity	IEP	HCCA
BP	GO:0070727	cellular macromolecule localization	IEP	HCCA
BP	GO:0071705	nitrogen compound transport	IEP	HCCA
CC	GO:0140513	nuclear protein-containing complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR011545	DEAD/DEAH_box_helicase_dom	320	469
IPR007502	Helicase-assoc_dom	768	859
IPR011709	DEAD-box_helicase_OB_fold	896	1004
IPR001650	Helicase_C	620	705

External Links

No external refs found!