AMTR_s00004p00265170 (PDF2,...)

Aliases : PDF2, evm_27.TU.AmTr_v1.0_scaffold00004.265

Description : RNA biosynthesis.transcriptional activation.HB (Homeobox) superfamily.HD-ZIP IV transcription factor

Gene families : OG0000253 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000253_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AMTR_s00004p00265170

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00024p00094630	EDT1, HDG11,...	RNA biosynthesis.transcriptional activation.HB...	0.04	OrthoFinder output from all 47 species
AT3G61150	HDG1, HD-GL2-1	homeodomain GLABROUS 1	0.01	OrthoFinder output from all 47 species
AT4G04890	PDF2	protodermal factor 2	0.03	OrthoFinder output from all 47 species
AT4G21750	ATML1	Homeobox-leucine zipper family protein / lipid-binding...	0.03	OrthoFinder output from all 47 species
Adi_g006830	HDG2	HD-ZIP IV-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Adi_g110417	ATML1	HD-ZIP IV-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Adi_g117416	PDF2	HD-ZIP IV-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Aev_g14063	PDF2	HD-ZIP IV-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Aev_g18649	ATML1	HD-ZIP IV-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Ala_g25555	PDF2	HD-ZIP IV-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Als_g05720	PDF2	HD-ZIP IV-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Als_g07199	PDF2	HD-ZIP IV-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Aop_g07013	PDF2	HD-ZIP IV-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene17219.t1	PDF2, Aspi01Gene17219	HD-ZIP IV-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene47379.t1	PDF2, Aspi01Gene47379	HD-ZIP IV-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Azfi_s0006.g009667	PDF2	HD-ZIP IV-type transcription factor & original...	0.04	OrthoFinder output from all 47 species
Azfi_s0100.g044331	PDF2	HD-ZIP IV-type transcription factor & original...	0.03	OrthoFinder output from all 47 species
Ceric.01G001800.1	PDF2, Ceric.01G001800	HD-ZIP IV-type transcription factor & original...	0.03	OrthoFinder output from all 47 species
Ceric.12G070600.1	PDF2, Ceric.12G070600	HD-ZIP IV-type transcription factor & original...	0.02	OrthoFinder output from all 47 species
Ceric.1Z119300.1	HDG2, Ceric.1Z119300	HD-ZIP IV-type transcription factor & original...	0.02	OrthoFinder output from all 47 species
Dcu_g15269	PDF2	HD-ZIP IV-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Dcu_g20177	ATML1	HD-ZIP IV-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Dde_g16909	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Dde_g25466	PDF2	HD-ZIP IV-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Ehy_g13320	PDF2	HD-ZIP IV-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Gb_18862	PDF2	transcription factor (HD-ZIP IV)	0.02	OrthoFinder output from all 47 species
LOC_Os09g35760.1	HDG1, HD-GL2-1,...	transcription factor (HD-ZIP IV)	0.02	OrthoFinder output from all 47 species
Len_g11571	HDG2	HD-ZIP IV-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Len_g52682	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
MA_19830g0010	PDF2	transcription factor (HD-ZIP IV)	0.02	OrthoFinder output from all 47 species
Msp_g14857	ATML1	HD-ZIP IV-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Msp_g15753	PDF2	HD-ZIP IV-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Nbi_g13790	PDF2	HD-ZIP IV-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Ore_g11149	ATML1	HD-ZIP IV-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Ppi_g03228	PDF2	HD-ZIP IV-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Solyc09g015110.2.1	Solyc09g015110	no hits & (original description: none)	0.03	OrthoFinder output from all 47 species
Spa_g06195	ATML1	HD-ZIP IV-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Spa_g16174	ATML1	HD-ZIP IV-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Zm00001e040312_P001	PDF2, Zm00001e040312	transcription factor (HD-ZIP IV)	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	None	Extended
MF	GO:0003700	DNA-binding transcription factor activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006355	regulation of DNA-templated transcription	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
MF	GO:0043565	sequence-specific DNA binding	IEA	Interproscan
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds	IEP	HCCA
MF	GO:0004650	polygalacturonase activity	IEP	HCCA
BP	GO:0005975	carbohydrate metabolic process	IEP	HCCA
MF	GO:0015035	protein-disulfide reductase activity	IEP	HCCA
MF	GO:0015036	disulfide oxidoreductase activity	IEP	HCCA
MF	GO:0016667	oxidoreductase activity, acting on a sulfur group of donors	IEP	HCCA
MF	GO:0016798	hydrolase activity, acting on glycosyl bonds	IEP	HCCA
BP	GO:0019725	cellular homeostasis	IEP	HCCA
BP	GO:0042592	homeostatic process	IEP	HCCA
BP	GO:0045454	cell redox homeostasis	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR002913	START_lipid-bd_dom	241	463
IPR001356	Homeobox_dom	51	106

External Links

No external refs found!

AMTR_s00004p00265170 (PDF2,...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation