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  5. AMTR_s00004p00154100

AMTR_s00004p00154100 (CRTISO, CCR2,...)


Aliases : CRTISO, CCR2, evm_27.TU.AmTr_v1.0_scaffold00004.161

Description : Secondary metabolism.terpenoids.terpenoid synthesis.carotenoid metabolism.CrtISO carotenoid isomerase


Gene families : OG0006448 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006448_tree

Sequence : coding (download), protein (download)


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Type Description Actions
Neighborhood HRR: AMTR_s00004p00154100

Target Alias Description ECC score Gene Family Method Actions
Ala_g13435 CRTISO, CCR2 carotenoid isomerase *(CrtISO) & original description: none 0.04 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001095.9 CRTISO, CCR2 Prolycopene isomerase, chloroplastic OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Ehy_g01422 CRTISO, CCR2 carotenoid isomerase *(CrtISO) & original description: none 0.02 OrthoFinder output from all 47 species
Len_g28542 CRTISO, CCR2 carotenoid isomerase *(CrtISO) & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g20406 CRTISO, CCR2 carotenoid isomerase *(CrtISO) & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004252 serine-type endopeptidase activity IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006810 transport IEP HCCA
BP GO:0008104 protein localization IEP HCCA
BP GO:0015031 protein transport IEP HCCA
MF GO:0015399 primary active transmembrane transporter activity IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
MF GO:0016887 ATP hydrolysis activity IEP HCCA
BP GO:0017038 protein import IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
MF GO:0042626 ATPase-coupled transmembrane transporter activity IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
BP GO:0051179 localization IEP HCCA
BP GO:0051234 establishment of localization IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
BP GO:0071705 nitrogen compound transport IEP HCCA

No InterPro domains available for this sequence

No external refs found!